rule days_to_analyse: input: participant_info = "data/raw/{pid}/" + config["METRICS_FOR_ANALYSIS"]["GROUNDTRUTH_TABLE"] + "_raw.csv" params: days_before_surgery = "{days_before_surgery}", days_in_hospital = "{days_in_hospital}", days_after_discharge= "{days_after_discharge}" output: "data/interim/{pid}/days_to_analyse_{days_before_surgery}_{days_in_hospital}_{days_after_discharge}.csv" script: "../src/models/select_days_to_analyse.py" rule get_targets: input: participant_info = "data/raw/{pid}/" + config["METRICS_FOR_ANALYSIS"]["GROUNDTRUTH_TABLE"] + "_raw.csv" params: summarised = "{summarised}" output: "data/processed/{pid}/targets_{summarised}.csv" script: "../src/models/get_targets.py"