rule join_features_from_providers: input: location_features = find_features_files output: "data/processed/features/{pid}/{sensor_key}.csv" script: "../src/features/join_features_from_providers.R" rule messages_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["MESSAGES"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["MESSAGES"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/messages_features/messages_r_{provider_key}.csv" script: "../src/features/messages/messages_entry.R" rule messages_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["MESSAGES"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["MESSAGES"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/messages_features/messages_python_{provider_key}.csv" script: "../src/features/messages/messages_entry.py" rule calls_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["CALLS"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["CALLS"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/calls_features/calls_python_{provider_key}.csv" script: "../src/features/calls/calls_entry.py" rule calls_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["CALLS"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["CALLS"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/calls_features/calls_r_{provider_key}.csv" script: "../src/features/calls/calls_entry.R" rule battery_deltas: input: expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["BATTERY"]["DB_TABLE"]) output: "data/processed/{pid}/battery_deltas.csv" script: "../src/features/battery_deltas.R" rule screen_deltas: input: screen = expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["SCREEN"]["DB_TABLE"]) output: "data/processed/{pid}/screen_deltas.csv" script: "../src/features/screen_deltas.R" rule google_activity_recognition_deltas: input: expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["ANDROID"]) output: expand("data/processed/{{pid}}/{sensor}_deltas.csv", sensor=config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["ANDROID"]) script: "../src/features/activity_recognition_deltas.R" rule ios_activity_recognition_deltas: input: expand("data/raw/{{pid}}/{sensor}_with_datetime_unified.csv", sensor=config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["IOS"]) output: expand("data/processed/{{pid}}/{sensor}_deltas.csv", sensor=config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["IOS"]) script: "../src/features/activity_recognition_deltas.R" rule locations_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_processed_{locations_to_use}.csv", sensor=config["LOCATIONS"]["DB_TABLE"], locations_to_use=config["LOCATIONS"]["LOCATIONS_TO_USE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["LOCATIONS"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}", output: "data/interim/{pid}/locations_features/locations_python_{provider_key}.csv" script: "../src/features/locations/locations_entry.py" rule locations_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_processed_{locations_to_use}.csv", sensor=config["LOCATIONS"]["DB_TABLE"], locations_to_use=config["LOCATIONS"]["LOCATIONS_TO_USE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["LOCATIONS"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/locations_features/locations_r_{provider_key}.csv" script: "../src/features/locations/locations_entry.R" rule bluetooth_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["BLUETOOTH"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["BLUETOOTH"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/bluetooth_features/bluetooth_r_{provider_key}.csv" script: "../src/features/bluetooth/bluetooth_entry.R" rule bluetooth_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["BLUETOOTH"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["BLUETOOTH"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/bluetooth_features/bluetooth_python_{provider_key}.csv" script: "../src/features/bluetooth/bluetooth_entry.py" rule activity_features: input: optional_ar_input params: segment = "{day_segment}", features = config["ACTIVITY_RECOGNITION"]["FEATURES"] output: "data/processed/{pid}/activity_recognition_{day_segment}.csv" script: "../src/features/activity_recognition.py" rule battery_features: input: "data/processed/{pid}/battery_deltas.csv" params: day_segment = "{day_segment}", features = config["BATTERY"]["FEATURES"] output: "data/processed/{pid}/battery_{day_segment}.csv" script: "../src/features/battery_features.py" rule screen_features: input: screen_deltas = "data/processed/{pid}/screen_deltas.csv", phone_sensed_bins = "data/interim/{pid}/phone_sensed_bins.csv" params: day_segment = "{day_segment}", reference_hour_first_use = config["SCREEN"]["REFERENCE_HOUR_FIRST_USE"], features_deltas = config["SCREEN"]["FEATURES_DELTAS"], episode_types = config["SCREEN"]["EPISODE_TYPES"], ignore_episodes_shorter_than = config["SCREEN"]["IGNORE_EPISODES_SHORTER_THAN"], ignore_episodes_longer_than = config["SCREEN"]["IGNORE_EPISODES_LONGER_THAN"], bin_size = config["PHONE_VALID_SENSED_BINS"]["BIN_SIZE"] output: "data/processed/{pid}/screen_{day_segment}.csv" script: "../src/features/screen_features.py" rule light_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["LIGHT"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["LIGHT"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/light_features/light_r_{provider_key}.csv" script: "../src/features/light/light_entry.R" rule light_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["LIGHT"]["DB_TABLE"]), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["LIGHT"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/light_features/light_python_{provider_key}.csv" script: "../src/features/light/light_entry.py" rule conversation_features: input: optional_conversation_input params: day_segment = "{day_segment}", features = config["CONVERSATION"]["FEATURES"], recordingMinutes = config["CONVERSATION"]["RECORDINGMINUTES"], pausedMinutes = config["CONVERSATION"]["PAUSEDMINUTES"], output: "data/processed/{pid}/conversation_{day_segment}.csv" script: "../src/features/conversation_features.py" rule accelerometer_features: input: expand("data/raw/{{pid}}/{sensor}_with_datetime.csv", sensor=config["ACCELEROMETER"]["DB_TABLE"]), params: day_segment = "{day_segment}", magnitude = config["ACCELEROMETER"]["FEATURES"]["MAGNITUDE"], exertional_activity_episode = config["ACCELEROMETER"]["FEATURES"]["EXERTIONAL_ACTIVITY_EPISODE"], nonexertional_activity_episode = config["ACCELEROMETER"]["FEATURES"]["NONEXERTIONAL_ACTIVITY_EPISODE"], valid_sensed_minutes = config["ACCELEROMETER"]["FEATURES"]["VALID_SENSED_MINUTES"], output: "data/processed/{pid}/accelerometer_{day_segment}.csv" script: "../src/features/accelerometer_features.py" rule applications_foreground_features: input: expand("data/interim/{{pid}}/{sensor}_with_datetime_with_genre.csv", sensor=config["APPLICATIONS_FOREGROUND"]["DB_TABLE"]) params: day_segment = "{day_segment}", single_categories = config["APPLICATIONS_FOREGROUND"]["SINGLE_CATEGORIES"], multiple_categories = config["APPLICATIONS_FOREGROUND"]["MULTIPLE_CATEGORIES"], single_apps = config["APPLICATIONS_FOREGROUND"]["SINGLE_APPS"], excluded_categories = config["APPLICATIONS_FOREGROUND"]["EXCLUDED_CATEGORIES"], excluded_apps = config["APPLICATIONS_FOREGROUND"]["EXCLUDED_APPS"], features = config["APPLICATIONS_FOREGROUND"]["FEATURES"], output: "data/processed/{pid}/applications_foreground_{day_segment}.csv" script: "../src/features/applications_foreground_features.py" rule wifi_r_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor_key}_with_datetime_visibleandconnected.csv", sensor_key="WIFI".lower()), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["WIFI"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/wifi_features/wifi_r_{provider_key}.csv" script: "../src/features/wifi/wifi_entry.R" rule wifi_python_features: input: sensor_data = expand("data/raw/{{pid}}/{sensor_key}_with_datetime_visibleandconnected.csv", sensor_key="WIFI".lower()), day_segments_labels = "data/interim/day_segments_labels.csv" params: provider = lambda wildcards: config["WIFI"]["PROVIDERS"][wildcards.provider_key], provider_key = "{provider_key}" output: "data/interim/{pid}/wifi_features/wifi_python_{provider_key}.csv" script: "../src/features/wifi/wifi_entry.py" rule fitbit_heartrate_features: input: heartrate_summary_data = "data/raw/{pid}/fitbit_heartrate_summary_with_datetime.csv", heartrate_intraday_data = "data/raw/{pid}/fitbit_heartrate_intraday_with_datetime.csv" params: day_segment = "{day_segment}", summary_features = config["HEARTRATE"]["SUMMARY_FEATURES"], intraday_features = config["HEARTRATE"]["INTRADAY_FEATURES"] output: "data/processed/{pid}/fitbit_heartrate_{day_segment}.csv" script: "../src/features/fitbit_heartrate_features.py" rule fitbit_step_features: input: step_data = "data/raw/{pid}/fitbit_step_intraday_with_datetime.csv", sleep_data = optional_steps_sleep_input params: day_segment = "{day_segment}", features_all_steps = config["STEP"]["FEATURES"]["ALL_STEPS"], features_sedentary_bout = config["STEP"]["FEATURES"]["SEDENTARY_BOUT"], features_active_bout = config["STEP"]["FEATURES"]["ACTIVE_BOUT"], threshold_active_bout = config["STEP"]["THRESHOLD_ACTIVE_BOUT"], include_zero_step_rows = config["STEP"]["INCLUDE_ZERO_STEP_ROWS"], exclude_sleep = config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"], exclude_sleep_type = config["STEP"]["EXCLUDE_SLEEP"]["TYPE"], exclude_sleep_fixed_start = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["START"], exclude_sleep_fixed_end = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["END"], output: "data/processed/{pid}/fitbit_step_{day_segment}.csv" script: "../src/features/fitbit_step_features.py" rule fitbit_sleep_features: input: sleep_summary_data = "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv", sleep_intraday_data = "data/raw/{pid}/fitbit_sleep_intraday_with_datetime.csv" params: day_segment = "{day_segment}", summary_features = config["SLEEP"]["SUMMARY_FEATURES"], sleep_types = config["SLEEP"]["SLEEP_TYPES"] output: "data/processed/{pid}/fitbit_sleep_{day_segment}.csv" script: "../src/features/fitbit_sleep_features.py"