# Common.smk ########################################################################################################## def infer_participant_platform(participant_file): with open(participant_file, encoding="ISO-8859-1") as external_file: external_file_content = external_file.readlines() platforms = external_file_content[1].strip().split(",") if platforms[0] == "multiple" or (len(platforms) > 1 and "android" in platforms and "ios" in platforms): platform = "android" else: platform = platforms[0] if platform not in ["android", "ios"]: raise ValueError("Platform (line 2) in a participant file should be 'android', 'ios', or 'multiple'. You typed '" + platforms + "'") return platform # Features.smk ######################################################################################################### def find_features_files(wildcards): feature_files = [] for provider_key, provider in config[(wildcards.sensor_key).upper()]["PROVIDERS"].items(): if provider["COMPUTE"]: feature_files.extend(expand("data/interim/{{pid}}/{sensor_key}_features/{sensor_key}_{language}_{provider_key}.csv", sensor_key=wildcards.sensor_key.lower(), language=provider["SRC_LANGUAGE"].lower(), provider_key=provider_key.lower())) return(feature_files) def optional_steps_sleep_input(wildcards): if config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"] == True and config["STEP"]["EXCLUDE_SLEEP"]["TYPE"] == "FITBIT_BASED": return "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv" else: return [] def input_merge_sensor_features_for_individual_participants(wildcards): feature_files = [] for config_key in config.keys(): if config_key.startswith(("PHONE", "FITBIT")) and "PROVIDERS" in config[config_key]: for provider_key, provider in config[config_key]["PROVIDERS"].items(): if "COMPUTE" in provider.keys() and provider["COMPUTE"]: feature_files.append("data/processed/features/{pid}/" + config_key.lower() + ".csv") break return feature_files # Reports.smk ########################################################################################################### def optional_heatmap_days_by_sensors_input(wildcards): platform = infer_participant_platform("data/external/"+wildcards.pid) if platform == "android": tables_platform = [table for table in config["HEATMAP_DAYS_BY_SENSORS"]["DB_TABLES"] if table not in [config["CONVERSATION"]["DB_TABLE"]["IOS"], config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["IOS"]]] # for android, discard any ios tables that may exist elif platform == "ios": tables_platform = [table for table in config["HEATMAP_DAYS_BY_SENSORS"]["DB_TABLES"] if table not in [config["CONVERSATION"]["DB_TABLE"]["ANDROID"], config["ACTIVITY_RECOGNITION"]["DB_TABLE"]["ANDROID"]]] # for ios, discard any android tables that may exist return expand("data/raw/{{pid}}/{table}_with_datetime.csv", table = tables_platform)