rule histogram_phone_data_yield: input: "data/processed/features/all_participants/all_sensor_features.csv" output: "reports/data_exploration/histogram_phone_data_yield.html" script: "../src/visualization/histogram_phone_data_yield.py" rule heatmap_features_correlations: input: features = expand("data/processed/{pid}/{sensor}_{time_segment}.csv", pid=config["PIDS"], sensor=config["HEATMAP_FEATURES_CORRELATIONS"]["PHONE_FEATURES"]+config["HEATMAP_FEATURES_CORRELATIONS"]["FITBIT_FEATURES"], time_segment=config["TIME_SEGMENTS"]), phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]) params: min_rows_ratio = config["HEATMAP_FEATURES_CORRELATIONS"]["MIN_ROWS_RATIO"], corr_threshold = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_THRESHOLD"], corr_method = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_METHOD"] output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_features_correlations.html" script: "../src/visualization/heatmap_features_correlations.py" rule heatmap_days_by_sensors: input: sensors = optional_heatmap_days_by_sensors_input, phone_valid_sensed_days = "data/interim/{pid}/phone_valid_sensed_days_{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins.csv" params: pid = "{pid}", expected_num_of_days = config["HEATMAP_DAYS_BY_SENSORS"]["EXPECTED_NUM_OF_DAYS"] output: "reports/interim/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/{pid}/heatmap_days_by_sensors.html" script: "../src/visualization/heatmap_days_by_sensors.py" rule heatmap_days_by_sensors_all_participants: input: heatmap_rows = expand("reports/interim/{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins/{pid}/heatmap_days_by_sensors.html", pid=config["PIDS"]) output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_days_by_sensors_all_participants.html" script: "../src/visualization/heatmap_days_by_sensors_all_participants.Rmd" rule heatmap_sensed_bins: input: sensor = "data/interim/{pid}/phone_sensed_bins.csv", pid_file = "data/external/{pid}" params: pid = "{pid}", bin_size = config["HEATMAP_SENSED_BINS"]["BIN_SIZE"] output: "reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html" script: "../src/visualization/heatmap_sensed_bins.py" rule heatmap_sensed_bins_all_participants: input: heatmap_sensed_bins = expand("reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html", pid=config["PIDS"]) output: "reports/data_exploration/heatmap_sensed_bins_all_participants.html" script: "../src/visualization/heatmap_sensed_bins_all_participants.Rmd" rule overall_compliance_heatmap: input: phone_sensed_bins = expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]), phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]), pid_files = expand("data/external/{pid}", pid=config["PIDS"]) params: only_show_valid_days = config["OVERALL_COMPLIANCE_HEATMAP"]["ONLY_SHOW_VALID_DAYS"], local_timezone = config["PHONE_DATA_CONFIGURATION"]["TIMEZONE"]["VALUE"], expected_num_of_days = config["OVERALL_COMPLIANCE_HEATMAP"]["EXPECTED_NUM_OF_DAYS"], bin_size = config["OVERALL_COMPLIANCE_HEATMAP"]["BIN_SIZE"], min_bins_per_hour = "{min_valid_bins_per_hour}" output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/overall_compliance_heatmap.html" script: "../src/visualization/overall_compliance_heatmap.py"