rule join_features_from_providers: input: location_features = find_features_files output: "data/processed/features/{pid}/{sensor_key}.csv" script: "../src/features/join_features_from_providers.R" rule phone_accelerometer_python_features: input: sensor_data = "data/raw/{pid}/phone_accelerometer_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_ACCELEROMETER"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_accelerometer" output: "data/interim/{pid}/phone_accelerometer_features/phone_accelerometer_python_{provider_key}.csv" script: "../src/features/entry.py" rule activity_recognition_episodes: input: sensor_data = "data/raw/{pid}/phone_activity_recognition_with_datetime_unified.csv" params: episode_threshold_between_rows = config["PHONE_BATTERY"]["EPISODE_THRESHOLD_BETWEEN_ROWS"] output: "data/interim/{pid}/phone_activity_recognition_episodes.csv" script: "../src/features/phone_activity_recognition/episodes/activity_recognition_episodes.R" rule phone_activity_recognition_python_features: input: sensor_episodes = "data/interim/{pid}/phone_activity_recognition_episodes_resampled_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_ACTIVITY_RECOGNITION"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_activity_recognition" output: "data/interim/{pid}/phone_activity_recognition_features/phone_activity_recognition_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_applications_foreground_python_features: input: sensor_data = "data/raw/{pid}/phone_applications_foreground_with_datetime_with_categories.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_APPLICATIONS_FOREGROUND"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_applications_foreground" output: "data/interim/{pid}/phone_applications_foreground_features/phone_applications_foreground_python_{provider_key}.csv" script: "../src/features/entry.py" rule battery_episodes: input: "data/raw/{pid}/phone_battery_raw.csv" params: episode_threshold_between_rows = config["PHONE_BATTERY"]["EPISODE_THRESHOLD_BETWEEN_ROWS"] output: "data/interim/{pid}/phone_battery_episodes.csv" script: "../src/features/phone_battery/episodes/battery_episodes.R" rule phone_battery_python_features: input: sensor_episodes = "data/interim/{pid}/phone_battery_episodes_resampled_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_BATTERY"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_battery" output: "data/interim/{pid}/phone_battery_features/phone_battery_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_bluetooth_r_features: input: sensor_data = "data/raw/{pid}/phone_bluetooth_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_BLUETOOTH"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_bluetooth" output: "data/interim/{pid}/phone_bluetooth_features/phone_bluetooth_r_{provider_key}.csv" script: "../src/features/entry.R" rule calls_r_features: input: sensor_data = "data/raw/{pid}/phone_calls_with_datetime_unified.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_CALLS"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_calls" output: "data/interim/{pid}/phone_calls_features/phone_calls_r_{provider_key}.csv" script: "../src/features/entry.R" rule conversation_python_features: input: sensor_data = "data/raw/{pid}/phone_conversation_with_datetime_unified.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_CONVERSATION"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_conversation" output: "data/interim/{pid}/phone_conversation_features/phone_conversation_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_light_python_features: input: sensor_data = "data/raw/{pid}/phone_light_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_LIGHT"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_light" output: "data/interim/{pid}/phone_light_features/phone_light_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_locations_r_features: input: sensor_data = "data/interim/{pid}/phone_locations_processed_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_LOCATIONS"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_locations" output: "data/interim/{pid}/phone_locations_features/phone_locations_r_{provider_key}.csv" script: "../src/features/entry.R" rule phone_locations_python_features: input: sensor_data = "data/interim/{pid}/phone_locations_processed_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_LOCATIONS"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_locations" output: "data/interim/{pid}/phone_locations_features/phone_locations_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_messages_r_features: input: sensor_data = "data/raw/{pid}/phone_messages_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_MESSAGES"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_messages" output: "data/interim/{pid}/phone_messages_features/phone_messages_r_{provider_key}.csv" script: "../src/features/entry.R" rule screen_episodes: input: screen = "data/raw/{pid}/phone_screen_with_datetime_unified.csv" output: "data/interim/{pid}/phone_screen_episodes.csv" script: "../src/features/phone_screen/episodes/screen_episodes.R" rule phone_screen_python_features: input: sensor_episodes = "data/interim/{pid}/phone_screen_episodes_resampled_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_SCREEN"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_screen" output: "data/interim/{pid}/phone_screen_features/phone_screen_python_{provider_key}.csv" script: "../src/features/entry.py" rule phone_wifi_connected_r_features: input: sensor_data = "data/raw/{pid}/phone_wifi_connected_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_WIFI_CONNECTED"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_wifi_connected" output: "data/interim/{pid}/phone_wifi_connected_features/phone_wifi_connected_r_{provider_key}.csv" script: "../src/features/entry.R" rule phone_wifi_visible_r_features: input: sensor_data = "data/raw/{pid}/phone_wifi_visible_with_datetime.csv", day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["PHONE_WIFI_VISIBLE"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "phone_wifi_visible" output: "data/interim/{pid}/phone_wifi_visible_features/phone_wifi_visible_r_{provider_key}.csv" script: "../src/features/entry.R" rule fitbit_heartrate_python_features: input: sensor_data = expand("data/raw/{{pid}}/fitbit_heartrate_{fitbit_data_type}_parsed_with_datetime.csv", fitbit_data_type=["summary", "intraday"]), day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["FITBIT_HEARTRATE"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "fitbit_heartrate" output: "data/interim/{pid}/fitbit_heartrate_features/fitbit_heartrate_python_{provider_key}.csv" script: "../src/features/entry.py" rule fitbit_steps_python_features: input: sensor_data = expand("data/raw/{{pid}}/fitbit_steps_{fitbit_data_type}_parsed_with_datetime.csv", fitbit_data_type=["summary", "intraday"]), day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv" params: provider = lambda wildcards: config["FITBIT_STEPS"]["PROVIDERS"][wildcards.provider_key.upper()], provider_key = "{provider_key}", sensor_key = "fitbit_steps" output: "data/interim/{pid}/fitbit_steps_features/fitbit_steps_python_{provider_key}.csv" script: "../src/features/entry.py" # rule fitbit_heartrate_features: # input: # heartrate_summary_data = "data/raw/{pid}/fitbit_heartrate_summary_with_datetime.csv", # heartrate_intraday_data = "data/raw/{pid}/fitbit_heartrate_intraday_with_datetime.csv" # params: # day_segment = "{day_segment}", # summary_features = config["HEARTRATE"]["SUMMARY_FEATURES"], # intraday_features = config["HEARTRATE"]["INTRADAY_FEATURES"] # output: # "data/processed/{pid}/fitbit_heartrate_{day_segment}.csv" # script: # "../src/features/fitbit_heartrate_features.py" # rule fitbit_step_features: # input: # step_data = "data/raw/{pid}/fitbit_step_intraday_with_datetime.csv", # sleep_data = optional_steps_sleep_input # params: # day_segment = "{day_segment}", # features_all_steps = config["STEP"]["FEATURES"]["ALL_STEPS"], # features_sedentary_bout = config["STEP"]["FEATURES"]["SEDENTARY_BOUT"], # features_active_bout = config["STEP"]["FEATURES"]["ACTIVE_BOUT"], # threshold_active_bout = config["STEP"]["THRESHOLD_ACTIVE_BOUT"], # include_zero_step_rows = config["STEP"]["INCLUDE_ZERO_STEP_ROWS"], # exclude_sleep = config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"], # exclude_sleep_type = config["STEP"]["EXCLUDE_SLEEP"]["TYPE"], # exclude_sleep_fixed_start = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["START"], # exclude_sleep_fixed_end = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["END"], # output: # "data/processed/{pid}/fitbit_step_{day_segment}.csv" # script: # "../src/features/fitbit_step_features.py" # rule fitbit_sleep_features: # input: # sleep_summary_data = "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv", # sleep_intraday_data = "data/raw/{pid}/fitbit_sleep_intraday_with_datetime.csv" # params: # day_segment = "{day_segment}", # summary_features = config["SLEEP"]["SUMMARY_FEATURES"], # sleep_types = config["SLEEP"]["SLEEP_TYPES"] # output: # "data/processed/{pid}/fitbit_sleep_{day_segment}.csv" # script: # "../src/features/fitbit_sleep_features.py"