fitbitparsed_mysql¶
This data stream handles Fitbit sensor data downloaded using the Fitbit Web API, parsed, and stored in a MySQL database. Please note that RAPIDS cannot query the API directly; you need to use other available tools or implement your own. Once you have your parsed sensor data in a MySQL database, RAPIDS can process it.
What is the difference between JSON and plain data streams
Most people will only need fitbitjson_* because they downloaded and stored their data directly from Fitbit’s API. However, if, for some reason, you don’t have access to that JSON data and instead only have the parsed data (columns and rows), you can use this data stream.
Container¶
The container should be a MySQL database with a table per sensor, each containing all participants’ data.
The script to connect and download data from this container is at:
src/data/streams/fitbitparsed_mysql/container.R
Format¶
The format.yaml maps and transforms columns in your raw data stream to the mandatory columns RAPIDS needs for Fitbit sensors. This file is at:
src/data/streams/fitbitparsed_mysql/format.yaml
If you want to use this stream with your data, modify every sensor in format.yaml to map all columns except TIMESTAMP in [RAPIDS_COLUMN_MAPPINGS] to your raw data column names.
All columns are mandatory; however, all except device_id and local_date_time can be empty if you don’t have that data. Just have in mind that some features will be empty if some of these columns are empty.
FITBIT_HEARTRATE_SUMMARY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | local_date_time |
| DEVICE_ID | device_id |
| HEARTRATE_DAILY_RESTINGHR | heartrate_daily_restinghr |
| HEARTRATE_DAILY_CALORIESOUTOFRANGE | heartrate_daily_caloriesoutofrange |
| HEARTRATE_DAILY_CALORIESFATBURN | heartrate_daily_caloriesfatburn |
| HEARTRATE_DAILY_CALORIESCARDIO | heartrate_daily_caloriescardio |
| HEARTRATE_DAILY_CALORIESPEAK | heartrate_daily_caloriespeak |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Example of the raw data RAPIDS expects for this data stream
| device_id | local_date_time | heartrate_daily_restinghr | heartrate_daily_caloriesoutofrange | heartrate_daily_caloriesfatburn | heartrate_daily_caloriescardio | heartrate_daily_caloriespeak |
|---|---|---|---|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 | 72 | 1200.6102 | 760.3020 | 15.2048 | 0 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-08 | 70 | 1100.1120 | 660.0012 | 23.7088 | 0 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-09 | 69 | 750.3615 | 734.1516 | 131.8579 | 0 |
FITBIT_HEARTRATE_INTRADAY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | local_date_time |
| DEVICE_ID | device_id |
| HEARTRATE | heartrate |
| HEARTRATE_ZONE | heartrate_zone |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Example of the raw data RAPIDS expects for this data stream
| device_id | local_date_time | heartrate | heartrate_zone |
|---|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:00:00 | 68 | outofrange |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:01:00 | 67 | outofrange |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:02:00 | 67 | outofrange |
FITBIT_SLEEP_SUMMARY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| LOCAL_START_DATE_TIME | local_start_date_time |
| LOCAL_END_DATE_TIME | local_end_date_time |
| DEVICE_ID | device_id |
| EFFICIENCY | efficiency |
| MINUTES_AFTER_WAKEUP | minutes_after_wakeup |
| MINUTES_ASLEEP | minutes_asleep |
| MINUTES_AWAKE | minutes_awake |
| MINUTES_TO_FALL_ASLEEP | minutes_to_fall_asleep |
| MINUTES_IN_BED | minutes_in_bed |
| IS_MAIN_SLEEP | is_main_sleep |
| TYPE | type |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
- src/data/streams/mutations/fitbit/add_local_date_time.py - src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Fitbit API has two versions for sleep data, v1 and v1.2. We support both but ignore v1’s count_awake, duration_awake, and count_awakenings, count_restless, duration_restless columns.
Example of the expected raw data
| device_id | local_start_date_time | local_end_date_time | efficiency | minutes_after_wakeup | minutes_asleep | minutes_awake | minutes_to_fall_asleep | minutes_in_bed | is_main_sleep | type |
|---|---|---|---|---|---|---|---|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-10 15:36:30 | 2020-10-10 16:37:00 | 92 | 0 | 55 | 5 | 0 | 60 | 0 | classic |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-10 01:46:30 | 2020-10-10 08:10:00 | 88 | 0 | 318 | 65 | 0 | 383 | 1 | stages |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-11 00:12:30 | 2020-10-11 11:47:00 | 89 | 1 | 562 | 132 | 0 | 694 | 1 | stages |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-12 01:31:00 | 2020-10-12 09:34:30 | 93 | 0 | 415 | 68 | 0 | 483 | 1 | stages |
FITBIT_SLEEP_INTRADAY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | local_date_time |
| DEVICE_ID | device_id |
| TYPE_EPISODE_ID | type_episode_id |
| DURATION | duration |
| IS_MAIN_SLEEP | is_main_sleep |
| TYPE | type |
| LEVEL | level |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Fitbit API has two versions for sleep data, v1 and v1.2, we support both.
Example of the expected raw data
| device_id | type_episode_id | local_date_time | duration | level | is_main_sleep | type |
|---|---|---|---|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 0 | 2020-10-10 15:36:30 | 60 | restless | 0 | classic |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 0 | 2020-10-10 15:37:30 | 660 | asleep | 0 | classic |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 0 | 2020-10-10 15:48:30 | 60 | restless | 0 | classic |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | … | … | … | … | … | … |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 1 | 2020-10-10 01:46:30 | 420 | light | 1 | stages |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 1 | 2020-10-10 01:53:30 | 1230 | deep | 1 | stages |
FITBIT_STEPS_SUMMARY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | local_date_time |
| STEPS | steps |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Example of the expected raw data
| device_id | local_date_time | steps |
|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 | 1775 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-08 | 3201 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-09 | 998 |
FITBIT_STEPS_INTRADAY
RAPIDS_COLUMN_MAPPINGS
| RAPIDS column | Stream column |
|---|---|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | local_date_time |
| STEPS | steps |
MUTATION
-
COLUMN_MAPPINGS (None)
-
SCRIPTS
src/data/streams/mutations/fitbit/add_zero_timestamp.py
Note
add_zero_timestamp adds an all-zero column called timestamp that will be filled in later in the pipeline by readable_time.R converting LOCAL_DATE_TIME to a unix timestamp taking into account single or multiple time zones.
Example of the expected raw data
| device_id | local_date_time | steps |
|---|---|---|
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:00:00 | 5 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:01:00 | 3 |
| a748ee1a-1d0b-4ae9-9074-279a2b6ba524 | 2020-10-07 00:02:00 | 0 |