import pandas as pd from scipy.stats import entropy from CalculatingFeatures.helper_functions import convertInputInto2dTime, convert2DEmpaticaToArray hrvFeatureNames, hrvFreqFeatureNames from CalculatingFeatures.calculate_features import calculateFeatures import sys def getSampleRate(data): try: timestamps_diff = data['timestamp'].diff().dropna().mean() except: raise Exception("Error occured while trying to get the mean sample rate from the data.") return 1000/timestamps_diff def extractIBIFeaturesFromIntradayData(ibi_intraday_data, features, window_length, time_segment, filter_data_by_segment): ibi_intraday_features = pd.DataFrame(columns=["local_segment"] + features) if not ibi_intraday_data.empty: sample_rate = getSampleRate(ibi_intraday_data) ibi_intraday_data = filter_data_by_segment(ibi_intraday_data, time_segment) if not ibi_intraday_data.empty: ibi_intraday_features = pd.DataFrame() # apply methods from calculate features module # if window_length is None: # ibi_intraday_features = \ # ibi_intraday_data.groupby('local_segment').apply(\ # lambda x: calculateFeatures(convertInputInto2d(x['blood_volume_pulse'], x.shape[0]), fs=int(sample_rate), featureNames=features)) # else: # ibi_intraday_features = \ # ibi_intraday_data.groupby('local_segment').apply(\ # lambda x: calculateFeatures(convertInputInto2d(x['blood_volume_pulse'], window_length*int(sample_rate)), fs=int(sample_rate), featureNames=features)) ibi_intraday_features.reset_index(inplace=True) return ibi_intraday_features def cr_features(sensor_data_files, time_segment, provider, filter_data_by_segment, *args, **kwargs): ibi_intraday_data = pd.read_csv(sensor_data_files["sensor_data"]) requested_intraday_features = provider["FEATURES"] calc_windows = kwargs.get('calc_windows', False) if provider["WINDOWS"]["COMPUTE"] and calc_windows: requested_window_length = provider["WINDOWS"]["WINDOW_LENGTH"] else: requested_window_length = None # name of the features this function can compute base_intraday_features_names = hrvFeatureNames + hrvFreqFeatureNames # the subset of requested features this function can compute intraday_features_to_compute = list(set(requested_intraday_features) & set(base_intraday_features_names)) # extract features from intraday data ibi_intraday_features = extractBVPFeaturesFromIntradayData(ibi_intraday_data, intraday_features_to_compute, requested_window_length, time_segment, filter_data_by_segment) return ibi_intraday_features