source("renv/activate.R") library("tidyverse") gar <- read.csv(snakemake@input[[1]]) if(nrow(gar) > 0){ activity_episodes <- gar %>% mutate(activity_episode = cumsum(c(1, head(activity_type, -1) != tail(activity_type, -1)))) %>% group_by(activity_episode) %>% filter(n() > 1) %>% summarize(activity = first(activity_name), time_diff = (last(timestamp) - first(timestamp)) / (1000 * 60), local_start_date_time = first(local_date_time), local_end_date_time = last(local_date_time), local_start_date = first(local_date), local_end_date = last(local_date), local_start_day_segment = first(local_day_segment), local_end_day_segment = last(local_day_segment)) %>% select(-activity_episode) } else { activity_episodes <- data.frame(activity = character(), time_diff = numeric(), local_start_date_time = character(), local_end_date_time = character(), local_start_date = character(), local_end_date = character(), local_start_day_segment = character(), local_end_day_segment = character()) } write.csv(activity_episodes, snakemake@output[[1]], row.names = FALSE)