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updated Dockerfile with git and rapids_example.sql

pull/95/head
Agam 2020-09-01 00:25:08 -04:00
parent 6cbd73c676
commit faee2bd540
1 changed files with 7 additions and 1 deletions
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@ -15,6 +15,7 @@ RUN apt update && apt install -y r-base
RUN apt install -y pandoc RUN apt install -y pandoc
RUN apt install -y git RUN apt install -y git
RUN apt-get update && apt-get install -y vim RUN apt-get update && apt-get install -y vim
RUN apt update && apt install -y unzip
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH /opt/conda/bin:$PATH ENV PATH /opt/conda/bin:$PATH
@ -42,6 +43,11 @@ WORKDIR /rapids
RUN conda env create -f environment.yml -n rapids RUN conda env create -f environment.yml -n rapids
RUN Rscript --vanilla -e 'install.packages("rmarkdown", repos="http://cran.us.r-project.org")' RUN Rscript --vanilla -e 'install.packages("rmarkdown", repos="http://cran.us.r-project.org")'
RUN R -e 'renv::restore()' RUN R -e 'renv::restore()'
COPY rapids_example.sql ./data/external ADD https://osf.io/587wc/download data/external
RUN mv data/external/download data/external/rapids_example.sql.zip
RUN unzip data/external/rapids_example.sql.zip
RUN cp rapids_example.sql data/external/rapids_example.sql
RUN rm data/external/rapids_example.sql.zip
RUN rm rapids_example.sql
RUN echo "source activate rapids" > ~/.bashrc RUN echo "source activate rapids" > ~/.bashrc
ENV PATH /opt/conda/envs/rapids/bin:$PATH ENV PATH /opt/conda/envs/rapids/bin:$PATH