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Python Virtual Environment
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Update your conda environment.yaml
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Update and prune your conda environment from a environment.yaml file
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R Virtual Environment
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</a>
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<nav class="md-nav" aria-label="R Virtual Environment">
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<li class="md-nav__item">
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<a href="#add-new-packages_1" class="md-nav__link">
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<a href="#update-your-r-renvlock" class="md-nav__link">
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Update your R renv.lock
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<a href="#python-virtual-environment" class="md-nav__link">
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Python Virtual Environment
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Update your conda environment.yaml
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<a href="#update-and-prune-your-conda-environment-from-a-environmentyaml-file" class="md-nav__link">
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Update and prune your conda environment from a environment.yaml file
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<a href="#r-virtual-environment" class="md-nav__link">
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R Virtual Environment
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</a>
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<nav class="md-nav" aria-label="R Virtual Environment">
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<ul class="md-nav__list">
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<li class="md-nav__item">
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<a href="#add-new-packages_1" class="md-nav__link">
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Add new packages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#remove-packages_1" class="md-nav__link">
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Remove packages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#update-your-r-renvlock" class="md-nav__link">
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Update your R renv.lock
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</a>
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</li>
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<h1 id="virtual-environments">Virtual Environments<a class="headerlink" href="#virtual-environments" title="Permanent link">¶</a></h1>
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<h2 id="add-new-packages">Add new packages<a class="headerlink" href="#add-new-packages" title="Permanent link">¶</a></h2>
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<p>Try to install any new package using <code>conda</code>. If a package is not available in one of <code>conda</code>‘s channels you can install it with <code>pip</code> but make sure your virtual environment is active.</p>
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<h2 id="update-your-conda-environmentyaml">Update your conda <code>environment.yaml</code><a class="headerlink" href="#update-your-conda-environmentyaml" title="Permanent link">¶</a></h2>
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<p>After installing a new package you can use the following command in your terminal to update your <code>environment.yaml</code> before publishing your pipeline. Note that we ignore the package version for <code>libfortran</code> to keep compatibility with Linux:</p>
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<h1>Virtual Environments</h1>
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<h2 id="python-virtual-environment">Python Virtual Environment<a class="headerlink" href="#python-virtual-environment" title="Permanent link">¶</a></h2>
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<h3 id="add-new-packages">Add new packages<a class="headerlink" href="#add-new-packages" title="Permanent link">¶</a></h3>
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<p>Try to install any new package using <code>conda install -c CHANNEL PACKAGE_NAME</code> (you can use <code>pip</code> if the package is only available there). Make sure your Python virtual environment is active (<code>conda activate YOUR_ENV</code>).</p>
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<h3 id="remove-packages">Remove packages<a class="headerlink" href="#remove-packages" title="Permanent link">¶</a></h3>
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<p>Uninstall packages using the same manager you used to install them <code>conda remove PACKAGE_NAME</code> or <code>pip uninstall PACKAGE_NAME</code></p>
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<h3 id="update-your-conda-environmentyaml">Update your conda <code>environment.yaml</code><a class="headerlink" href="#update-your-conda-environmentyaml" title="Permanent link">¶</a></h3>
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<p>After installing or removing a package you can use the following command in your terminal to update your <code>environment.yaml</code> before publishing your pipeline. Note that we ignore the package version for <code>libfortran</code> to keep compatibility with Linux:
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<div class="highlight"><pre><span></span><code>conda env <span class="nb">export</span> --no-builds <span class="p">|</span> sed <span class="s1">'s/^.*libgfortran.*$/ - libgfortran/'</span> > environment.yml
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</code></pre></div>
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<h2 id="update-and-prune-your-conda-environment-from-a-environmentyaml-file">Update and prune your conda environment from a <code>environment.yaml</code> file<a class="headerlink" href="#update-and-prune-your-conda-environment-from-a-environmentyaml-file" title="Permanent link">¶</a></h2>
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<p>Execute the following command in your terminal, see these docs for more <a href="https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#updating-an-environment">information</a></p>
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<div class="highlight"><pre><span></span><code>conda env update --prefix ./env --file environment.yml --prune
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</code></pre></div>
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</code></pre></div></p>
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<h2 id="r-virtual-environment">R Virtual Environment<a class="headerlink" href="#r-virtual-environment" title="Permanent link">¶</a></h2>
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<h3 id="add-new-packages_1">Add new packages<a class="headerlink" href="#add-new-packages_1" title="Permanent link">¶</a></h3>
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<ol>
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
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<li>Run <code>R</code> to open an R interactive session</li>
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<li>Run <code>renv::install("PACKAGE_NAME")</code></li>
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</ol>
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<h3 id="remove-packages_1">Remove packages<a class="headerlink" href="#remove-packages_1" title="Permanent link">¶</a></h3>
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<ol>
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
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<li>Run <code>R</code> to open an R interactive session</li>
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<li>Run <code>renv::remove("PACKAGE_NAME")</code></li>
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</ol>
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<h3 id="update-your-r-renvlock">Update your R <code>renv.lock</code><a class="headerlink" href="#update-your-r-renvlock" title="Permanent link">¶</a></h3>
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<p>After installing or removing a package you can use the following command in your terminal to update your <code>renv.lock</code> before publishing your pipeline.</p>
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<ol>
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
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<li>Run <code>R</code> to open an R interactive session</li>
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<li>Run <code>renv::snapshot()</code> (renv will ask you to confirm any updates to this file)</li>
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<label class="md-nav__link md-nav__link--active" for="__toc">
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Python Virtual Environment
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Update and prune your conda environment from a environment.yaml file
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<a href="#r-virtual-environment" class="md-nav__link">
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R Virtual Environment
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</a>
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<nav class="md-nav" aria-label="R Virtual Environment">
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<ul class="md-nav__list">
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<a href="#add-new-packages_1" class="md-nav__link">
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</a>
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<li class="md-nav__item">
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Remove packages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#update-your-r-renvlock" class="md-nav__link">
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Update your R renv.lock
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</a>
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</li>
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</ul>
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Table of contents
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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Python Virtual Environment
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</a>
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<nav class="md-nav" aria-label="Python Virtual Environment">
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<ul class="md-nav__list">
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<li class="md-nav__item">
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<a href="#add-new-packages" class="md-nav__link">
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Add new packages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#remove-packages" class="md-nav__link">
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Remove packages
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</a>
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</li>
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<li class="md-nav__item">
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@ -962,13 +1018,45 @@
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Update your conda environment.yaml
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</a>
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</li>
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</ul>
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</nav>
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<li class="md-nav__item">
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<a href="#update-and-prune-your-conda-environment-from-a-environmentyaml-file" class="md-nav__link">
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Update and prune your conda environment from a environment.yaml file
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<a href="#r-virtual-environment" class="md-nav__link">
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R Virtual Environment
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</a>
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<nav class="md-nav" aria-label="R Virtual Environment">
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<ul class="md-nav__list">
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<li class="md-nav__item">
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<a href="#add-new-packages_1" class="md-nav__link">
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Add new packages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#remove-packages_1" class="md-nav__link">
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#update-your-r-renvlock" class="md-nav__link">
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Update your R renv.lock
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</a>
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</li>
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</ul>
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</nav>
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</a>
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<h1 id="virtual-environments">Virtual Environments<a class="headerlink" href="#virtual-environments" title="Permanent link">¶</a></h1>
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<h2 id="add-new-packages">Add new packages<a class="headerlink" href="#add-new-packages" title="Permanent link">¶</a></h2>
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<p>Try to install any new package using <code>conda</code>. If a package is not available in one of <code>conda</code>‘s channels you can install it with <code>pip</code> but make sure your virtual environment is active.</p>
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<h2 id="update-your-conda-environmentyaml">Update your conda <code>environment.yaml</code><a class="headerlink" href="#update-your-conda-environmentyaml" title="Permanent link">¶</a></h2>
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<p>After installing a new package you can use the following command in your terminal to update your <code>environment.yaml</code> before publishing your pipeline. Note that we ignore the package version for <code>libfortran</code> to keep compatibility with Linux:</p>
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<h1>Virtual Environments</h1>
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<h2 id="python-virtual-environment">Python Virtual Environment<a class="headerlink" href="#python-virtual-environment" title="Permanent link">¶</a></h2>
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<h3 id="add-new-packages">Add new packages<a class="headerlink" href="#add-new-packages" title="Permanent link">¶</a></h3>
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<p>Try to install any new package using <code>conda install -c CHANNEL PACKAGE_NAME</code> (you can use <code>pip</code> if the package is only available there). Make sure your Python virtual environment is active (<code>conda activate YOUR_ENV</code>).</p>
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<h3 id="remove-packages">Remove packages<a class="headerlink" href="#remove-packages" title="Permanent link">¶</a></h3>
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<p>Uninstall packages using the same manager you used to install them <code>conda remove PACKAGE_NAME</code> or <code>pip uninstall PACKAGE_NAME</code></p>
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<h3 id="update-your-conda-environmentyaml">Update your conda <code>environment.yaml</code><a class="headerlink" href="#update-your-conda-environmentyaml" title="Permanent link">¶</a></h3>
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<p>After installing or removing a package you can use the following command in your terminal to update your <code>environment.yaml</code> before publishing your pipeline. Note that we ignore the package version for <code>libfortran</code> to keep compatibility with Linux:
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<div class="highlight"><pre><span></span><code>conda env <span class="nb">export</span> --no-builds <span class="p">|</span> sed <span class="s1">'s/^.*libgfortran.*$/ - libgfortran/'</span> > environment.yml
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</code></pre></div>
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<h2 id="update-and-prune-your-conda-environment-from-a-environmentyaml-file">Update and prune your conda environment from a <code>environment.yaml</code> file<a class="headerlink" href="#update-and-prune-your-conda-environment-from-a-environmentyaml-file" title="Permanent link">¶</a></h2>
|
||||
<p>Execute the following command in your terminal, see these docs for more <a href="https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#updating-an-environment">information</a></p>
|
||||
<div class="highlight"><pre><span></span><code>conda env update --prefix ./env --file environment.yml --prune
|
||||
</code></pre></div>
|
||||
</code></pre></div></p>
|
||||
<h2 id="r-virtual-environment">R Virtual Environment<a class="headerlink" href="#r-virtual-environment" title="Permanent link">¶</a></h2>
|
||||
<h3 id="add-new-packages_1">Add new packages<a class="headerlink" href="#add-new-packages_1" title="Permanent link">¶</a></h3>
|
||||
<ol>
|
||||
<li>Open your terminal and navigate to RAPIDS’ root folder</li>
|
||||
<li>Run <code>R</code> to open an R interactive session</li>
|
||||
<li>Run <code>renv::install("PACKAGE_NAME")</code></li>
|
||||
</ol>
|
||||
<h3 id="remove-packages_1">Remove packages<a class="headerlink" href="#remove-packages_1" title="Permanent link">¶</a></h3>
|
||||
<ol>
|
||||
<li>Open your terminal and navigate to RAPIDS’ root folder</li>
|
||||
<li>Run <code>R</code> to open an R interactive session</li>
|
||||
<li>Run <code>renv::remove("PACKAGE_NAME")</code></li>
|
||||
</ol>
|
||||
<h3 id="update-your-r-renvlock">Update your R <code>renv.lock</code><a class="headerlink" href="#update-your-r-renvlock" title="Permanent link">¶</a></h3>
|
||||
<p>After installing or removing a package you can use the following command in your terminal to update your <code>renv.lock</code> before publishing your pipeline.</p>
|
||||
<ol>
|
||||
<li>Open your terminal and navigate to RAPIDS’ root folder</li>
|
||||
<li>Run <code>R</code> to open an R interactive session</li>
|
||||
<li>Run <code>renv::snapshot()</code> (renv will ask you to confirm any updates to this file)</li>
|
||||
</ol>
|
||||
|
||||
|
||||
|
||||
|
|
|
|||
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Reference in New Issue