Completely overhaul environment.yml.

environment.yml

@@ -2,162 +2,28 @@ name: rapids
 channels:
   - conda-forge
 dependencies:
-  - _libgcc_mutex
-  - _openmp_mutex
-  - _py-xgboost-mutex
-  - appdirs
-  - arrow
-  - asn1crypto
-  - astropy
-  - attrs
-  - binaryornot
-  - blas
-  - brotlipy
-  - bzip2
-  - ca-certificates
-  - certifi
-  - cffi
-  - chardet
-  - click
-  - colorama
-  - cookiecutter
-  - cryptography
-  - datrie
-  - docutils
-  - future
-  - gitdb
-  - gitdb2
-  - gitpython
-  - idna
-  - imbalanced-learn
-  - importlib-metadata
-  - importlib_metadata
-  - intel-openmp
-  - jinja2
-  - jinja2-time
-  - joblib
-  - jsonschema
-  - ld_impl_linux-64
-  - libblas
-  - libcblas
-  - libcxx
-  - libcxxabi
-  - libedit
-  - libffi
-  - libgcc-ng
-  - libgfortran
-  - libgfortran
-  - libgfortran
-  - liblapack
-  - libopenblas
-  - libstdcxx-ng
-  - libxgboost
-  - libzlib
-  - lightgbm
-  - llvm-openmp
-  - markupsafe
-  - mkl
-  - mkl-service
-  - mkl_fft
-  - mkl_random
-  - more-itertools
-  - ncurses
-  - numpy
-  - numpy-base
-  - openblas
-  - openssl
-  - pandas
-  - pbr
-  - pip
-  - plotly
-  - poyo
-  - psutil
-  - py-xgboost
-  - pycparser
-  - pyerfa
-  - pyopenssl
-  - pysocks
-  - python
-  - python-dateutil
-  - python_abi
-  - pytz
-  - pyyaml
-  - readline
-  - requests
-  - retrying
-  - setuptools
-  - six
-  - smmap
-  - smmap2
-  - sqlite
-  - threadpoolctl
-  - tk
-  - tqdm
-  - urllib3
-  - wheel
-  - whichcraft
-  - wrapt
-  - xgboost
-  - xz
-  - yaml
-  - zipp
-  - zlib
-  - pip:
-    - amply
     - auto-sklearn
-    - bidict
-    - biosppy
-    - build
-    - cached-property
-    - cloudpickle
-    - configargparse
-    - configspace
-    - cr-features
-    - cycler
-    - cython
-    - dask
-    - decorator
-    - distributed
-    - distro
-    - emcee
-    - fonttools
-    - fsspec
-    - h5py
-    - heapdict
     - hmmlearn
-    - ipython-genutils
+    - imbalanced-learn
-    - jupyter-core
+    - jsonschema
-    - kiwisolver
+    - lightgbm
-    - liac-arff
-    - locket
     - matplotlib
-    - msgpack
+    - numpy
-    - nbformat
+    - pandas
-    - opencv-python
-    - packaging
-    - partd
     - peakutils
-    - pep517
+    - plotly
-    - pillow
+    - python-dateutil
-    - pulp
+    - pytz
-    - pynisher
-    - pyparsing
-    - pyrfr
-    - pyrsistent
     - pywavelets
-    - ratelimiter
+    - pyyaml
     - scikit-learn
     - scipy
     - seaborn
-    - shortuuid
+    - setuptools
-    - smac
+    - bioconda::snakemake 
-    - snakemake
+    - bioconda::snakemake-minimal
-    - sortedcontainers
+    - tqdm
-    - tblib
+    - xgboost
-    - tomli
+    - pip:
-    - toolz
+        - biosppy
-    - toposort
+        - cr_features
-    - tornado
-    - traitlets
-    - typing-extensions
-    - zict