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Fix MissingInputException issue of download_fitbit_data rule

pull/103/head
Meng Li 2020-10-27 14:59:47 -04:00
parent 2601ccde87
commit c8176b2d90
1 changed files with 1 additions and 1 deletions
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2
rules/preprocessing.smk
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@ -41,7 +41,7 @@ rule download_phone_data:
rule download_fitbit_data: rule download_fitbit_data:
input: input:
participant_file = "data/external/participant_files/{pid}.yaml", participant_file = "data/external/participant_files/{pid}.yaml",
input_file = "" if config["SENSOR_DATA"]["FITBIT"]["SOURCE"]["TYPE"] == "DATABASE" else lambda wildcards: config["FITBIT_" + str(wildcards.sensor).upper()]["TABLE"]["CSV"][str(wildcards.fitbit_data_type).upper()] input_file = [] if config["SENSOR_DATA"]["FITBIT"]["SOURCE"]["TYPE"] == "DATABASE" else lambda wildcards: config["FITBIT_" + str(wildcards.sensor).upper()]["TABLE"]["CSV"][str(wildcards.fitbit_data_type).upper()]
params: params:
source = config["SENSOR_DATA"]["FITBIT"]["SOURCE"], source = config["SENSOR_DATA"]["FITBIT"]["SOURCE"],
sensor = "fitbit_" + "{sensor}", sensor = "fitbit_" + "{sensor}",