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move install and script to testing stages

pull/97/head
Agam 2020-09-02 12:14:39 -04:00
parent 5a2e2a2a0a
commit c6cfef100f
1 changed files with 20 additions and 12 deletions
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32
.travis.yml
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@ -26,11 +26,21 @@ jobs:
- source "$HOME/miniconda/etc/profile.d/conda.sh" - source "$HOME/miniconda/etc/profile.d/conda.sh"
- hash -r - hash -r
- conda config --set always_yes yes --set changeps1 no - conda config --set always_yes yes --set changeps1 no
install:
- conda init bash
- conda update -q --all --yes conda
- conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
- conda activate test-environment
- snakemake -j1 renv_install
- R -e 'renv::settings$use.cache(FALSE)'
- snakemake -j1 renv_restore
cache: cache:
directories: directories:
- /home/travis/.linuxbrew - /home/travis/.linuxbrew
- $HOME/.local/share/renv - $HOME/.local/share/renv
- $TRAVIS_BUILD_DIR/renv/library - $TRAVIS_BUILD_DIR/renv/library
script:
- bash tests/scripts/run_tests.sh
- name: "Python 3.7 on macOS" - name: "Python 3.7 on macOS"
os: osx os: osx
@ -45,7 +55,14 @@ jobs:
- HOMEBREW_NO_AUTO_UPDATE=1 brew cask install miniconda - HOMEBREW_NO_AUTO_UPDATE=1 brew cask install miniconda
- eval "$(/opt/miniconda3/condabin/conda shell.bash hook)" - eval "$(/opt/miniconda3/condabin/conda shell.bash hook)"
- eval "$(conda shell.bash hook)" # properly initialise non-interactive shell with gcc and no update brew - eval "$(conda shell.bash hook)" # properly initialise non-interactive shell with gcc and no update brew
install:
- conda init bash
- conda update -q --all --yes conda
- conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
- conda activate test-environment
- snakemake -j1 renv_install
- R -e 'renv::settings$use.cache(FALSE)'
- snakemake -j1 renv_restore
env: env:
- RENV_PATHS_ROOT="$HOME/renv/cache" - RENV_PATHS_ROOT="$HOME/renv/cache"
cache: cache:
@ -53,6 +70,8 @@ jobs:
- /usr/local/lib/R - /usr/local/lib/R
- $RENV_PATHS_ROOT - $RENV_PATHS_ROOT
- $TRAVIS_BUILD_DIR/renv/library - $TRAVIS_BUILD_DIR/renv/library
script:
- bash tests/scripts/run_tests.sh
- stage: deploy - stage: deploy
name: "Python 3.7 on Xenial Linux Docker" name: "Python 3.7 on Xenial Linux Docker"
@ -64,17 +83,6 @@ jobs:
- docker tag rapids agamk/rapids:travislatest - docker tag rapids agamk/rapids:travislatest
- docker push agamk/rapids:travislatest - docker push agamk/rapids:travislatest
install:
- conda init bash
- conda update -q --all --yes conda
- conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
- conda activate test-environment
- snakemake -j1 renv_install
- R -e 'renv::settings$use.cache(FALSE)'
- snakemake -j1 renv_restore
script:
- bash tests/scripts/run_tests.sh
branches: branches:
only: only: