Merge branch 'feature/config_validation' into develop
JulioV
commit
bef868671e
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@ -1,4 +1,6 @@
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from snakemake.utils import validate
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configfile: "config.yaml"
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configfile: "config.yaml"
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validate(config, "tools/config.schema.yaml")
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include: "rules/common.smk"
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include: "rules/common.smk"
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include: "rules/renv.smk"
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include: "rules/renv.smk"
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include: "rules/preprocessing.smk"
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include: "rules/preprocessing.smk"
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@ -75,7 +75,7 @@ PHONE_ACTIVITY_RECOGNITION:
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TABLE:
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TABLE:
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ANDROID: plugin_google_activity_recognition
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ANDROID: plugin_google_activity_recognition
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IOS: plugin_ios_activity_recognition
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IOS: plugin_ios_activity_recognition
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EPISODE_THRESHOLD_BETWEEN_ROWS: 5 # minutes. Max time difference for two consecutive rows to be considered within the same battery episode.
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EPISODE_THRESHOLD_BETWEEN_ROWS: 5 # minutes. Max time difference for two consecutive rows to be considered within the same AR episode.
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PROVIDERS:
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PROVIDERS:
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RAPIDS:
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RAPIDS:
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COMPUTE: False
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COMPUTE: False
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@ -155,7 +155,7 @@ PHONE_BLUETOOTH:
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SRC_FOLDER: "rapids" # inside src/features/phone_bluetooth
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SRC_FOLDER: "rapids" # inside src/features/phone_bluetooth
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SRC_LANGUAGE: "r"
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SRC_LANGUAGE: "r"
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DORYAB:
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DORYAB:
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COMPUTE: FALSE
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COMPUTE: False
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FEATURES:
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FEATURES:
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ALL:
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ALL:
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DEVICES: ["countscans", "uniquedevices", "meanscans", "stdscans"]
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DEVICES: ["countscans", "uniquedevices", "meanscans", "stdscans"]
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@ -212,7 +212,7 @@ PHONE_DATA_YIELD:
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RAPIDS:
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RAPIDS:
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COMPUTE: False
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COMPUTE: False
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FEATURES: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
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FEATURES: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1 representing the number of minutes with at least
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1, minimum percentage of valid minutes in an hour to be considered valid.
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SRC_LANGUAGE: "r"
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SRC_LANGUAGE: "r"
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SRC_FOLDER: "rapids" # inside src/features/phone_data_yield
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SRC_FOLDER: "rapids" # inside src/features/phone_data_yield
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@ -335,7 +335,7 @@ FITBIT_DATA_YIELD:
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RAPIDS:
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RAPIDS:
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COMPUTE: False
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COMPUTE: False
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FEATURES: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
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FEATURES: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1 representing the number of minutes with at least
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1, minimum percentage of valid minutes in an hour to be considered valid.
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SRC_LANGUAGE: "r"
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SRC_LANGUAGE: "r"
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SRC_FOLDER: "rapids" # inside src/features/fitbit_data_yield
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SRC_FOLDER: "rapids" # inside src/features/fitbit_data_yield
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@ -18,6 +18,9 @@ local({
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if(grepl("Darwin", Sys.info()["sysname"], fixed = TRUE) & grepl("ARM64", Sys.info()["version"], fixed = TRUE)) # M1 Macs
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if(grepl("Darwin", Sys.info()["sysname"], fixed = TRUE) & grepl("ARM64", Sys.info()["version"], fixed = TRUE)) # M1 Macs
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Sys.setenv("TZDIR" = file.path(R.home(), "share", "zoneinfo"))
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Sys.setenv("TZDIR" = file.path(R.home(), "share", "zoneinfo"))
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# set timezone library
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#Sys.setenv("TZDIR" = file.path(R.home(), "share", "zoneinfo"))
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# signal that we've consented to use renv
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# signal that we've consented to use renv
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options(renv.consent = TRUE)
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options(renv.consent = TRUE)
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@ -0,0 +1,17 @@
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# Adapted from https://bitbucket.org/snakemake/snakemake/pull-requests/291/schema-based-validation/diff
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from jsonschema import Draft7Validator
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import yaml
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import collections
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class OrderedLoader(yaml.Loader):
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pass
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def construct_mapping(loader, node):
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loader.flatten_mapping(node)
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return collections.OrderedDict(loader.construct_pairs(node))
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OrderedLoader.add_constructor(yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG, construct_mapping)
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with open("tools/config.schema.yaml") as f:
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data = yaml.load(f, OrderedLoader)
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Draft7Validator.check_schema(data)
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print("Schema is OK")
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@ -0,0 +1,992 @@
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$schema: "http://json-schema.org/draft-07/schema#"
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description: RAPIDS configuration schema
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required:
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- DATABASE_GROUP
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- TIMEZONE
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- PIDS
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- CREATE_PARTICIPANT_FILES
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- TIME_SEGMENTS
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- PHONE_DATA_CONFIGURATION
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- PHONE_ACCELEROMETER
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- PHONE_ACTIVITY_RECOGNITION
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- PHONE_APPLICATIONS_CRASHES
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- PHONE_APPLICATIONS_FOREGROUND
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- PHONE_APPLICATIONS_NOTIFICATIONS
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- PHONE_AWARE_LOG
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- PHONE_BATTERY
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- PHONE_BLUETOOTH
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- PHONE_CALLS
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- PHONE_CONVERSATION
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- PHONE_DATA_YIELD
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- PHONE_KEYBOARD
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- PHONE_LOCATIONS
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- PHONE_MESSAGES
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- PHONE_SCREEN
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- PHONE_WIFI_CONNECTED
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- PHONE_WIFI_VISIBLE
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- FITBIT_DATA_CONFIGURATION
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- FITBIT_DATA_YIELD
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- FITBIT_HEARTRATE_SUMMARY
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- FITBIT_HEARTRATE_INTRADAY
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- FITBIT_SLEEP_SUMMARY
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- FITBIT_STEPS_SUMMARY
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- FITBIT_STEPS_INTRADAY
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- HISTOGRAM_PHONE_DATA_YIELD
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- HEATMAP_PHONE_DATA_YIELD_PER_PARTICIPANT_PER_TIME_SEGMENT
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- HEATMAP_SENSORS_PER_MINUTE_PER_TIME_SEGMENT
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- HEATMAP_SENSOR_ROW_COUNT_PER_TIME_SEGMENT
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- HEATMAP_FEATURE_CORRELATION_MATRIX
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definitions:
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PROVIDER:
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type: object
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required: [COMPUTE, SRC_FOLDER, SRC_LANGUAGE, FEATURES]
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properties:
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COMPUTE:
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type: boolean
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FEATURES:
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type: [array, object]
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SRC_FOLDER:
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type: string
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SRC_LANGUAGE:
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type: string
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enum: [python, r]
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DORYAB_BLUETOOTH_FEATURE:
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type: object
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required: [DEVICES, SCANS_MOST_FREQUENT_DEVICE, SCANS_LEAST_FREQUENT_DEVICE]
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properties:
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DEVICES:
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type: array
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uniqueItems: True
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items:
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type: string
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enum: ["countscans", "uniquedevices", "meanscans", "stdscans"]
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SCANS_MOST_FREQUENT_DEVICE:
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type: array
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uniqueItems: True
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items:
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type: string
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enum: ["withinsegments", "acrosssegments", "acrossdataset"]
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SCANS_LEAST_FREQUENT_DEVICE:
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type: array
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uniqueItems: True
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items:
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type: string
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enum: ["withinsegments", "acrosssegments", "acrossdataset"]
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APPLICATION_CATEGORIES_FEATURE:
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type: object
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required: [CATALOGUE_SOURCE, CATALOGUE_FILE, UPDATE_CATALOGUE_FILE, SCRAPE_MISSING_CATEGORIES]
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properties:
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CATALOGUE_SOURCE:
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type: string
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enum: ["FILE", "GOOGLE"]
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CATALOGUE_FILE:
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type: string
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pattern: "^.*\\.csv$"
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UPDATE_CATALOGUE_FILE:
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type: boolean
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SCRAPE_MISSING_CATEGORIES:
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type: boolean
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DATA_CONFIGURATION:
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type: object
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required: [SOURCE, TIMEZONE]
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properties:
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SOURCE:
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type: object
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required: [TYPE, DATABASE_GROUP, DEVICE_ID_COLUMN]
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properties:
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TYPE:
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type: string
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DATABASE_GROUP:
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type: string
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DEVICE_ID_COLUMN:
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type: string
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TIMEZONE:
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type: object
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required: [TYPE, VALUE]
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properties:
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||||||
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TYPE:
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||||||
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type: string
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||||||
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VALUE:
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||||||
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type: string
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||||||
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properties:
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DATABASE_GROUP:
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type: string
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||||||
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TIMEZONE:
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type: string
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||||||
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||||||
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PIDS:
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||||||
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type: array
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||||||
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uniqueItems: True
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||||||
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items:
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||||||
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type: string
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||||||
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CREATE_PARTICIPANT_FILES:
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type: object
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required: [SOURCE, PHONE_SECTION, FITBIT_SECTION]
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|
properties:
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SOURCE:
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||||||
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type: object
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||||||
|
required: [TYPE]
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||||||
|
properties:
|
||||||
|
TYPE:
|
||||||
|
type: string
|
||||||
|
enum: [AWARE_DEVICE_TABLE, CSV_FILE]
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DATABASE_GROUP:
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||||||
|
type: string
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||||||
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CSV_FILE_PATH:
|
||||||
|
type: string
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||||||
|
pattern: "^.*\\.csv$"
|
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TIMEZONE:
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||||||
|
type: string
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||||||
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PHONE_SECTION:
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||||||
|
type: object
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|
properties:
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||||||
|
ADD:
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||||||
|
type: boolean
|
||||||
|
DEVICE_ID_COLUMN:
|
||||||
|
type: string
|
||||||
|
IGNORED_DEVICE_IDS:
|
||||||
|
type: array
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
FITBIT_SECTION:
|
||||||
|
properties:
|
||||||
|
ADD:
|
||||||
|
type: boolean
|
||||||
|
DEVICE_ID_COLUMN:
|
||||||
|
type: string
|
||||||
|
IGNORED_DEVICE_IDS:
|
||||||
|
type: array
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
|
||||||
|
TIME_SEGMENTS:
|
||||||
|
type: object
|
||||||
|
required: [TYPE, FILE, INCLUDE_PAST_PERIODIC_SEGMENTS]
|
||||||
|
properties:
|
||||||
|
TYPE:
|
||||||
|
type: string
|
||||||
|
enum: ["FREQUENCY", "PERIODIC", "EVENT"]
|
||||||
|
FILE:
|
||||||
|
type: string
|
||||||
|
pattern: "^.*\\.csv$"
|
||||||
|
INCLUDE_PAST_PERIODIC_SEGMENTS:
|
||||||
|
type: boolean
|
||||||
|
|
||||||
|
PHONE_DATA_CONFIGURATION:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/DATA_CONFIGURATION"
|
||||||
|
- properties:
|
||||||
|
SOURCE:
|
||||||
|
type: object
|
||||||
|
properties:
|
||||||
|
TYPE:
|
||||||
|
type: string
|
||||||
|
enum: [DATABASE]
|
||||||
|
|
||||||
|
PHONE_ACCELEROMETER:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"]
|
||||||
|
PANDA:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
VALID_SENSED_MINUTES:
|
||||||
|
type: boolean
|
||||||
|
FEATURES:
|
||||||
|
type: object
|
||||||
|
required: [exertional_activity_episode, nonexertional_activity_episode]
|
||||||
|
properties:
|
||||||
|
exertional_activity_episode:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["sumduration", "maxduration", "minduration", "avgduration", "medianduration", "stdduration"]
|
||||||
|
nonexertional_activity_episode:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["sumduration", "maxduration", "minduration", "avgduration", "medianduration", "stdduration"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_ACTIVITY_RECOGNITION:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, EPISODE_THRESHOLD_BETWEEN_ROWS, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: object
|
||||||
|
required: [ANDROID, IOS]
|
||||||
|
properties:
|
||||||
|
ANDROID:
|
||||||
|
type: string
|
||||||
|
IOS:
|
||||||
|
type: string
|
||||||
|
EPISODE_THRESHOLD_BETWEEN_ROWS:
|
||||||
|
type: integer
|
||||||
|
maximum: 1440
|
||||||
|
minimum: 0
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["count", "mostcommonactivity", "countuniqueactivities", "durationstationary", "durationmobile", "durationvehicle"]
|
||||||
|
ACTIVITY_CLASSES:
|
||||||
|
type: object
|
||||||
|
required: [STATIONARY, MOBILE, VEHICLE]
|
||||||
|
properties:
|
||||||
|
STATIONARY:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["still", "tilting"]
|
||||||
|
MOBILE:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["on_foot", "walking", "running", "on_bicycle"]
|
||||||
|
VEHICLE:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["in_vehicle"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_APPLICATIONS_CRASHES:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, APPLICATION_CATEGORIES, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
APPLICATION_CATEGORIES:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/APPLICATION_CATEGORIES_FEATURE"
|
||||||
|
PROVIDERS:
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_APPLICATIONS_FOREGROUND:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, APPLICATION_CATEGORIES, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
APPLICATION_CATEGORIES:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/APPLICATION_CATEGORIES_FEATURE"
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
SINGLE_CATEGORIES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
MULTIPLE_CATEGORIES:
|
||||||
|
type: object
|
||||||
|
additionalProperties:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
SINGLE_APPS:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
EXCLUDED_CATEGORIES:
|
||||||
|
type: ["null", array]
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
EXCLUDED_APPS:
|
||||||
|
type: array
|
||||||
|
uniqueItems: true
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["count", "timeoffirstuse", "timeoflastuse", "frequencyentropy"]
|
||||||
|
|
||||||
|
PHONE_APPLICATIONS_NOTIFICATIONS:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, APPLICATION_CATEGORIES, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
APPLICATION_CATEGORIES:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/APPLICATION_CATEGORIES_FEATURE"
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_AWARE_LOG:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_BATTERY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS, EPISODE_THRESHOLD_BETWEEN_ROWS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
EPISODE_THRESHOLD_BETWEEN_ROWS:
|
||||||
|
type: integer
|
||||||
|
maximum: 1440
|
||||||
|
minimum: 0
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countdischarge", "sumdurationdischarge", "countcharge", "sumdurationcharge", "avgconsumptionrate", "maxconsumptionrate"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_BLUETOOTH:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countscans", "uniquedevices", "countscansmostuniquedevice"]
|
||||||
|
DORYAB:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
type: object
|
||||||
|
required: [ALL, OWN, OTHERS]
|
||||||
|
properties:
|
||||||
|
ALL:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/DORYAB_BLUETOOTH_FEATURE"
|
||||||
|
OWN:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/DORYAB_BLUETOOTH_FEATURE"
|
||||||
|
OTHERS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/DORYAB_BLUETOOTH_FEATURE"
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
|
||||||
|
PHONE_CALLS:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
CALL_TYPES:
|
||||||
|
type: array
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: [missed, incoming, outgoing]
|
||||||
|
FEATURES:
|
||||||
|
type: object
|
||||||
|
required: [missed, incoming, outgoing]
|
||||||
|
properties:
|
||||||
|
missed:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type:
|
||||||
|
string
|
||||||
|
enum: [count, distinctcontacts, timefirstcall, timelastcall, countmostfrequentcontact]
|
||||||
|
incoming:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type:
|
||||||
|
string
|
||||||
|
enum: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
|
||||||
|
outgoing:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type:
|
||||||
|
string
|
||||||
|
enum: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_CONVERSATION:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: object
|
||||||
|
required: [ANDROID, IOS]
|
||||||
|
properties:
|
||||||
|
ANDROID:
|
||||||
|
type: string
|
||||||
|
IOS:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["minutessilence", "minutesnoise", "minutesvoice", "minutesunknown","sumconversationduration","avgconversationduration",
|
||||||
|
"sdconversationduration","minconversationduration","maxconversationduration","timefirstconversation","timelastconversation","noisesumenergy",
|
||||||
|
"noiseavgenergy","noisesdenergy","noiseminenergy","noisemaxenergy","voicesumenergy",
|
||||||
|
"voiceavgenergy","voicesdenergy","voiceminenergy","voicemaxenergy","silencesensedfraction","noisesensedfraction",
|
||||||
|
"voicesensedfraction","unknownsensedfraction","silenceexpectedfraction","noiseexpectedfraction","voiceexpectedfraction",
|
||||||
|
"unknownexpectedfraction","countconversation"]
|
||||||
|
RECORDING_MINUTES:
|
||||||
|
type: integer
|
||||||
|
minimum: 1
|
||||||
|
maximum: 1440
|
||||||
|
PAUSED_MINUTES:
|
||||||
|
type: integer
|
||||||
|
minimum: 1
|
||||||
|
maximum: 1440
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_DATA_YIELD:
|
||||||
|
type: object
|
||||||
|
required: [SENSORS, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
SENSORS:
|
||||||
|
type: ["null", array]
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["PHONE_ACCELEROMETER", "PHONE_ACTIVITY_RECOGNITION", "PHONE_APPLICATIONS_CRASHES", "PHONE_APPLICATIONS_FOREGROUND", "PHONE_APPLICATIONS_NOTIFICATIONS", "PHONE_AWARE_LOG", "PHONE_BATTERY", "PHONE_BLUETOOTH", "PHONE_CALLS", "PHONE_CONVERSATION", "PHONE_KEYBOARD", "PHONE_LIGHT", "PHONE_LOCATIONS", "PHONE_MESSAGES", "PHONE_SCREEN", "PHONE_WIFI_CONNECTED", "PHONE_WIFI_VISIBLE"]
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
|
||||||
|
MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS:
|
||||||
|
type: number
|
||||||
|
minimum: 0
|
||||||
|
maximum: 1
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_KEYBOARD:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_LIGHT:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["count", "maxlux", "minlux", "avglux", "medianlux", "stdlux"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_LOCATIONS:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, LOCATIONS_TO_USE, FUSED_RESAMPLED_CONSECUTIVE_THRESHOLD, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
LOCATIONS_TO_USE:
|
||||||
|
type: string
|
||||||
|
enum: [ALL, GPS, ALL_RESAMPLED, FUSED_RESAMPLED]
|
||||||
|
FUSED_RESAMPLED_CONSECUTIVE_THRESHOLD:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
FUSED_RESAMPLED_TIME_SINCE_VALID_LOCATION:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
DORYAB:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: [locationvariance,loglocationvariance,totaldistance,averagespeed,varspeed,circadianmovement,numberofsignificantplaces,numberlocationtransitions,radiusgyration,timeattop1location,timeattop2location,timeattop3location,movingtostaticratio,outlierstimepercent,maxlengthstayatclusters,minlengthstayatclusters,meanlengthstayatclusters,stdlengthstayatclusters,locationentropy,normalizedlocationentropy]
|
||||||
|
ACCURACY_LIMIT:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
DBSCAN_EPS:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
DBSCAN_MINSAMPLES:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
THRESHOLD_STATIC:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
MAXIMUM_ROW_GAP:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
MAXIMUM_ROW_DURATION:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
MINUTES_DATA_USED:
|
||||||
|
type: boolean
|
||||||
|
CLUSTER_ON:
|
||||||
|
type: string
|
||||||
|
enum: ["PARTICIPANT_DATASET", "TIME_SEGMENT"]
|
||||||
|
CLUSTERING_ALGORITHM:
|
||||||
|
type: string
|
||||||
|
enum: ["DBSCAN", "OPTICS"]
|
||||||
|
|
||||||
|
BARNETT:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["hometime","disttravelled","rog","maxdiam","maxhomedist","siglocsvisited","avgflightlen","stdflightlen","avgflightdur","stdflightdur","probpause","siglocentropy","circdnrtn","wkenddayrtn"]
|
||||||
|
ACCURACY_LIMIT:
|
||||||
|
type: integer
|
||||||
|
exclusiveMinimum: 0
|
||||||
|
TIMEZONE:
|
||||||
|
type: string
|
||||||
|
MINUTES_DATA_USED:
|
||||||
|
type: boolean
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_MESSAGES:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
MESSAGES_TYPES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["received", "sent"]
|
||||||
|
FEATURES:
|
||||||
|
type: object
|
||||||
|
required: [received, sent]
|
||||||
|
properties:
|
||||||
|
received:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["count", "distinctcontacts", "timefirstmessage", "timelastmessage", "countmostfrequentcontact"]
|
||||||
|
|
||||||
|
sent:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["count", "distinctcontacts", "timefirstmessage", "timelastmessage", "countmostfrequentcontact"]
|
||||||
|
|
||||||
|
PHONE_SCREEN:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
REFERENCE_HOUR_FIRST_USE:
|
||||||
|
type: integer
|
||||||
|
minimum: 0
|
||||||
|
maximum: 23
|
||||||
|
IGNORE_EPISODES_SHORTER_THAN:
|
||||||
|
type: integer
|
||||||
|
minimum: 0
|
||||||
|
IGNORE_EPISODES_LONGER_THAN:
|
||||||
|
type: integer
|
||||||
|
minimum: 0
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countepisode", "sumduration", "maxduration", "minduration", "avgduration", "stdduration", "firstuseafter"]
|
||||||
|
EPISODE_TYPES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["unlock"]
|
||||||
|
|
||||||
|
PHONE_WIFI_CONNECTED:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countscans", "uniquedevices", "countscansmostuniquedevice"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
PHONE_WIFI_VISIBLE:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countscans", "uniquedevices", "countscansmostuniquedevice"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
FITBIT_DATA_CONFIGURATION:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/DATA_CONFIGURATION"
|
||||||
|
- properties:
|
||||||
|
SOURCE:
|
||||||
|
properties:
|
||||||
|
TYPE:
|
||||||
|
type: string
|
||||||
|
enum: [DATABASE, FILES]
|
||||||
|
COLUMN_FORMAT:
|
||||||
|
type: string
|
||||||
|
enum: ["JSON", "PLAIN_TEXT"]
|
||||||
|
|
||||||
|
FITBIT_DATA_YIELD:
|
||||||
|
type: object
|
||||||
|
required: [SENSOR, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
SENSOR:
|
||||||
|
type: string
|
||||||
|
enum: ["FITBIT_HEARTRATE_INTRADAY"]
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["ratiovalidyieldedminutes", "ratiovalidyieldedhours"]
|
||||||
|
MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS:
|
||||||
|
type: number
|
||||||
|
minimum: 0
|
||||||
|
maximum: 1
|
||||||
|
|
||||||
|
|
||||||
|
FITBIT_HEARTRATE_SUMMARY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["maxrestinghr", "minrestinghr", "avgrestinghr", "medianrestinghr", "moderestinghr", "stdrestinghr", "diffmaxmoderestinghr", "diffminmoderestinghr", "entropyrestinghr"]
|
||||||
|
|
||||||
|
FITBIT_HEARTRATE_INTRADAY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "minutesonoutofrangezone", "minutesonfatburnzone", "minutesoncardiozone", "minutesonpeakzone"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
FITBIT_SLEEP_SUMMARY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, SLEEP_EPISODE_TIMESTAMP, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
SLEEP_EPISODE_TIMESTAMP:
|
||||||
|
type: string
|
||||||
|
enum: ["start", "end"]
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countepisode", "avgefficiency", "sumdurationafterwakeup", "sumdurationasleep", "sumdurationawake", "sumdurationtofallasleep", "sumdurationinbed", "avgdurationafterwakeup", "avgdurationasleep", "avgdurationawake", "avgdurationtofallasleep", "avgdurationinbed"]
|
||||||
|
SLEEP_TYPES:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["main", "nap", "all"]
|
||||||
|
additionalProperties:
|
||||||
|
$ref: "#/definitions/PROVIDER"
|
||||||
|
|
||||||
|
FITBIT_STEPS_SUMMARY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["maxsumsteps", "minsumsteps", "avgsumsteps", "mediansumsteps", "stdsumsteps"]
|
||||||
|
|
||||||
|
FITBIT_STEPS_INTRADAY:
|
||||||
|
type: object
|
||||||
|
required: [TABLE, PROVIDERS]
|
||||||
|
properties:
|
||||||
|
TABLE:
|
||||||
|
type: string
|
||||||
|
PROVIDERS:
|
||||||
|
type: ["null", object]
|
||||||
|
properties:
|
||||||
|
RAPIDS:
|
||||||
|
allOf:
|
||||||
|
- $ref: "#/definitions/PROVIDER"
|
||||||
|
- properties:
|
||||||
|
FEATURES:
|
||||||
|
required: [STEPS, SEDENTARY_BOUT, ACTIVE_BOUT]
|
||||||
|
properties:
|
||||||
|
STEPS:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["sum", "max", "min", "avg", "std"]
|
||||||
|
SEDENTARY_BOUT:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countepisode", "sumduration", "maxduration", "minduration", "avgduration", "stdduration"]
|
||||||
|
ACTIVE_BOUT:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["countepisode", "sumduration", "maxduration", "minduration", "avgduration", "stdduration"]
|
||||||
|
THRESHOLD_ACTIVE_BOUT:
|
||||||
|
type: integer
|
||||||
|
minimum: 0
|
||||||
|
INCLUDE_ZERO_STEP_ROWS:
|
||||||
|
type: boolean
|
||||||
|
|
||||||
|
HISTOGRAM_PHONE_DATA_YIELD:
|
||||||
|
type: object
|
||||||
|
required: [PLOT]
|
||||||
|
properties:
|
||||||
|
PLOT:
|
||||||
|
type: boolean
|
||||||
|
|
||||||
|
HEATMAP_PHONE_DATA_YIELD_PER_PARTICIPANT_PER_TIME_SEGMENT:
|
||||||
|
type: object
|
||||||
|
required: [PLOT]
|
||||||
|
properties:
|
||||||
|
PLOT:
|
||||||
|
type: boolean
|
||||||
|
|
||||||
|
HEATMAP_SENSORS_PER_MINUTE_PER_TIME_SEGMENT:
|
||||||
|
type: object
|
||||||
|
required: [PLOT]
|
||||||
|
properties:
|
||||||
|
PLOT:
|
||||||
|
type: boolean
|
||||||
|
|
||||||
|
HEATMAP_SENSOR_ROW_COUNT_PER_TIME_SEGMENT:
|
||||||
|
type: object
|
||||||
|
required: [PLOT, SENSORS]
|
||||||
|
properties:
|
||||||
|
PLOT:
|
||||||
|
type: boolean
|
||||||
|
SENSORS:
|
||||||
|
type: array
|
||||||
|
uniqueItems: True
|
||||||
|
items:
|
||||||
|
type: string
|
||||||
|
enum: ["PHONE_ACCELEROMETER", "PHONE_ACTIVITY_RECOGNITION", "PHONE_APPLICATIONS_FOREGROUND", "PHONE_BATTERY", "PHONE_BLUETOOTH", "PHONE_CALLS", "PHONE_CONVERSATION", "PHONE_LIGHT", "PHONE_LOCATIONS", "PHONE_MESSAGES", "PHONE_SCREEN", "PHONE_WIFI_CONNECTED", "PHONE_WIFI_VISIBLE"]
|
||||||
|
|
||||||
|
HEATMAP_FEATURE_CORRELATION_MATRIX:
|
||||||
|
type: object
|
||||||
|
required: [PLOT, MIN_ROWS_RATIO, CORR_THRESHOLD, CORR_METHOD]
|
||||||
|
properties:
|
||||||
|
PLOT:
|
||||||
|
type: boolean
|
||||||
|
MIN_ROWS_RATIO:
|
||||||
|
type: number
|
||||||
|
minimum: 0
|
||||||
|
maximum: 1
|
||||||
|
CORR_THRESHOLD:
|
||||||
|
type: number
|
||||||
|
minimum: 0
|
||||||
|
maximum: 1
|
||||||
|
CORR_METHOD:
|
||||||
|
type: string
|
||||||
|
enum: ["pearson", "kendall", "spearman"]
|
||||||
Loading…
Reference in New Issue