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Correct additional error in feature file naming. 

Add the final feature file to the list in Snakefile.
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junos 2022-04-06 17:29:17 +02:00
parent d2fbef5234
commit baa94c4c4e
2 changed files with 3 additions and 2 deletions
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3
Snakefile
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@ -169,7 +169,8 @@ for provider in config["PHONE_ESM"]["PROVIDERS"].keys():
files_to_compute.extend(expand("data/raw/{pid}/phone_esm_raw.csv",pid=config["PIDS"])) files_to_compute.extend(expand("data/raw/{pid}/phone_esm_raw.csv",pid=config["PIDS"]))
files_to_compute.extend(expand("data/raw/{pid}/phone_esm_with_datetime.csv",pid=config["PIDS"])) files_to_compute.extend(expand("data/raw/{pid}/phone_esm_with_datetime.csv",pid=config["PIDS"]))
files_to_compute.extend(expand("data/interim/{pid}/phone_esm_clean.csv",pid=config["PIDS"])) files_to_compute.extend(expand("data/interim/{pid}/phone_esm_clean.csv",pid=config["PIDS"]))
files_to_compute.extend(expand("data/interim/{pid}/phone_esm_features/phone_esm_clean_{provider_key}.csv",pid=config["PIDS"],provider_key=provider.lower())) files_to_compute.extend(expand("data/interim/{pid}/phone_esm_features/phone_esm_{language}_{provider_key}.csv",pid=config["PIDS"],language=get_script_language(config["PHONE_ESM"]["PROVIDERS"][provider]["SRC_SCRIPT"]),provider_key=provider.lower()))
files_to_compute.extend(expand("data/processed/features/{pid}/phone_esm.csv", pid=config["PIDS"]))
#files_to_compute.extend(expand("data/processed/features/{pid}/all_sensor_features.csv",pid=config["PIDS"])) #files_to_compute.extend(expand("data/processed/features/{pid}/all_sensor_features.csv",pid=config["PIDS"]))
#files_to_compute.append("data/processed/features/all_participants/all_sensor_features.csv") #files_to_compute.append("data/processed/features/all_participants/all_sensor_features.csv")

2
rules/features.smk
View File

@ -341,7 +341,7 @@ rule esm_features:
provider_key = "{provider_key}", provider_key = "{provider_key}",
sensor_key = "phone_esm", sensor_key = "phone_esm",
scales=lambda wildcards: config["PHONE_ESM"]["PROVIDERS"][wildcards.provider_key.upper()]["SCALES"] scales=lambda wildcards: config["PHONE_ESM"]["PROVIDERS"][wildcards.provider_key.upper()]["SCALES"]
output: "data/interim/{pid}/phone_esm_features/phone_esm_clean_{provider_key}.csv" output: "data/interim/{pid}/phone_esm_features/phone_esm_python_{provider_key}.csv"
script: script:
"../src/features/entry.py" "../src/features/entry.py"