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Add fitbitjson_csv

pull/128/head
JulioV 2021-03-11 11:25:44 -05:00
parent 470f4276af
commit b97b70e3a1
6 changed files with 396 additions and 251 deletions
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3
config.yaml
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@ -346,6 +346,9 @@ FITBIT_DATA_STREAMS:
DATABASE_GROUP: MY_GROUP DATABASE_GROUP: MY_GROUP
SLEEP_SUMMARY_EPISODE_DAY_ANCHOR: end # summary sleep episodes are considered as events based on either the start timestamp or end timestamp. SLEEP_SUMMARY_EPISODE_DAY_ANCHOR: end # summary sleep episodes are considered as events based on either the start timestamp or end timestamp.
fitbitjson_csv:
FOLDER: data/external/fitbit_csv
SLEEP_SUMMARY_EPISODE_DAY_ANCHOR: end # summary sleep episodes are considered as events based on either the start timestamp or end timestamp.
# Sensors ------ # Sensors ------

14
docs/datastreams/fitbitjson-csv.md 100644
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@ -0,0 +1,14 @@
# `fitbitjson_csv`
This [data stream](../../datastreams/data-streams-introduction) handles Fitbit sensor data downloaded using the [Fitbit Web API](https://dev.fitbit.com/build/reference/web-api/) and stored in a CSV file. Please note that RAPIDS cannot query the API directly; you need to use other available tools or implement your own. Once you have your sensor data in a CSV file, RAPIDS can process it.
## Container
The container should be a CSV file per Fitbit sensor, each containing all participants' data.
The script to connect and download data from this container is at:
```bash
src/data/streams/fitbitjson_csv/container.R
```
## Format
--8<---- "docs/snippets/jsonfitbit_format.md"

252
docs/datastreams/fitbitjson-mysql.md
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@ -11,254 +11,4 @@ src/data/streams/fitbitjson_mysql/container.R
## Format ## Format
The `format.yaml` maps and transforms columns in your raw data stream to the [mandatory columns RAPIDS needs for Fitbit sensors](../mandatory-fitbit-format). This file is at: --8<---- "docs/snippets/jsonfitbit_format.md"
```bash
src/data/streams/fitbitjson_mysql/format.yaml
```
If you want RAPIDS to process Fitbit sensor data using this stream, you will need to map `DEVICE_ID` and `JSON_FITBIT_COLUMN` to your own raw data columns inside **each sensor** section in `format.yaml`.
??? info "FITBIT_HEARTRATE_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| HEARTRATE_DAILY_RESTINGHR | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESOUTOFRANGE | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESFATBURN | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESCARDIO | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESPEAK | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_heartrate_summary_json.py
```
!!! note
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the raw data RAPIDS expects for this data stream"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-07","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1200.6102,"max":88,"min":31,"minutes":1058,"name":"Out of Range"},{"caloriesOut":760.3020,"max":120,"min":86,"minutes":366,"name":"Fat Burn"},{"caloriesOut":15.2048,"max":146,"min":120,"minutes":2,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":72}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":68},{"time":"00:01:00","value":67},{"time":"00:02:00","value":67},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-08","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1100.1120,"max":89,"min":30,"minutes":921,"name":"Out of Range"},{"caloriesOut":660.0012,"max":118,"min":82,"minutes":361,"name":"Fat Burn"},{"caloriesOut":23.7088,"max":142,"min":108,"minutes":3,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":70}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":77},{"time":"00:01:00","value":75},{"time":"00:02:00","value":73},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-09","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":750.3615,"max":77,"min":30,"minutes":851,"name":"Out of Range"},{"caloriesOut":734.1516,"max":107,"min":77,"minutes":550,"name":"Fat Burn"},{"caloriesOut":131.8579,"max":130,"min":107,"minutes":29,"name":"Cardio"},{"caloriesOut":0,"max":220,"min":130,"minutes":0,"name":"Peak"}],"restingHeartRate":69}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":90},{"time":"00:01:00","value":89},{"time":"00:02:00","value":88},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_HEARTRATE_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| HEARTRATE | FLAG_TO_MUTATE |
| HEARTRATE_ZONE | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_heartrate_intraday_json.py
```
!!! note
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the raw data RAPIDS expects for this data stream"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-07","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1200.6102,"max":88,"min":31,"minutes":1058,"name":"Out of Range"},{"caloriesOut":760.3020,"max":120,"min":86,"minutes":366,"name":"Fat Burn"},{"caloriesOut":15.2048,"max":146,"min":120,"minutes":2,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":72}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":68},{"time":"00:01:00","value":67},{"time":"00:02:00","value":67},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-08","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1100.1120,"max":89,"min":30,"minutes":921,"name":"Out of Range"},{"caloriesOut":660.0012,"max":118,"min":82,"minutes":361,"name":"Fat Burn"},{"caloriesOut":23.7088,"max":142,"min":108,"minutes":3,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":70}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":77},{"time":"00:01:00","value":75},{"time":"00:02:00","value":73},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-09","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":750.3615,"max":77,"min":30,"minutes":851,"name":"Out of Range"},{"caloriesOut":734.1516,"max":107,"min":77,"minutes":550,"name":"Fat Burn"},{"caloriesOut":131.8579,"max":130,"min":107,"minutes":29,"name":"Cardio"},{"caloriesOut":0,"max":220,"min":130,"minutes":0,"name":"Peak"}],"restingHeartRate":69}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":90},{"time":"00:01:00","value":89},{"time":"00:02:00","value":88},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_SLEEP_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| LOCAL_START_DATE_TIME | FLAG_TO_MUTATE |
| LOCAL_END_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| EFFICIENCY | FLAG_TO_MUTATE |
| MINUTES_AFTER_WAKEUP | FLAG_TO_MUTATE |
| MINUTES_ASLEEP | FLAG_TO_MUTATE |
| MINUTES_AWAKE | FLAG_TO_MUTATE |
| MINUTES_TO_FALL_ASLEEP | FLAG_TO_MUTATE |
| MINUTES_IN_BED | FLAG_TO_MUTATE |
| IS_MAIN_SLEEP | FLAG_TO_MUTATE |
| TYPE | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_sleep_summary_json.py
```
!!! note
Fitbit API has two versions for sleep data, v1 and v1.2. We support both but ignore v1's `count_awake`, `duration_awake`, and `count_awakenings`, `count_restless`, `duration_restless` columns.
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-10","duration":3600000,"efficiency":92,"endTime":"2020-10-10T16:37:00.000","infoCode":2,"isMainSleep":false,"levels":{"data":[{"dateTime":"2020-10-10T15:36:30.000","level":"restless","seconds":60},{"dateTime":"2020-10-10T15:37:30.000","level":"asleep","seconds":660},{"dateTime":"2020-10-10T15:48:30.000","level":"restless","seconds":60},...], "summary":{"asleep":{"count":0,"minutes":56},"awake":{"count":0,"minutes":0},"restless":{"count":3,"minutes":4}}},"logId":26315914306,"minutesAfterWakeup":0,"minutesAsleep":55,"minutesAwake":5,"minutesToFallAsleep":0,"startTime":"2020-10-10T15:36:30.000","timeInBed":60,"type":"classic"},{"dateOfSleep":"2020-10-10","duration":22980000,"efficiency":88,"endTime":"2020-10-10T08:10:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-10T01:46:30.000","level":"light","seconds":420},{"dateTime":"2020-10-10T01:53:30.000","level":"deep","seconds":1230},{"dateTime":"2020-10-10T02:14:00.000","level":"light","seconds":360},...], "summary":{"deep":{"count":3,"minutes":92,"thirtyDayAvgMinutes":0},"light":{"count":29,"minutes":193,"thirtyDayAvgMinutes":0},"rem":{"count":4,"minutes":33,"thirtyDayAvgMinutes":0},"wake":{"count":28,"minutes":65,"thirtyDayAvgMinutes":0}}},"logId":26311786557,"minutesAfterWakeup":0,"minutesAsleep":318,"minutesAwake":65,"minutesToFallAsleep":0,"startTime":"2020-10-10T01:46:30.000","timeInBed":383,"type":"stages"}],"summary":{"stages":{"deep":92,"light":193,"rem":33,"wake":65},"totalMinutesAsleep":373,"totalSleepRecords":2,"totalTimeInBed":443}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-11","duration":41640000,"efficiency":89,"endTime":"2020-10-11T11:47:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-11T00:12:30.000","level":"wake","seconds":450},{"dateTime":"2020-10-11T00:20:00.000","level":"light","seconds":870},{"dateTime":"2020-10-11T00:34:30.000","level":"wake","seconds":780},...], "summary":{"deep":{"count":4,"minutes":52,"thirtyDayAvgMinutes":62},"light":{"count":32,"minutes":442,"thirtyDayAvgMinutes":364},"rem":{"count":6,"minutes":68,"thirtyDayAvgMinutes":58},"wake":{"count":29,"minutes":132,"thirtyDayAvgMinutes":94}}},"logId":26589710670,"minutesAfterWakeup":1,"minutesAsleep":562,"minutesAwake":132,"minutesToFallAsleep":0,"startTime":"2020-10-11T00:12:30.000","timeInBed":694,"type":"stages"}],"summary":{"stages":{"deep":52,"light":442,"rem":68,"wake":132},"totalMinutesAsleep":562,"totalSleepRecords":1,"totalTimeInBed":694}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-12","duration":28980000,"efficiency":93,"endTime":"2020-10-12T09:34:30.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-12T01:31:00.000","level":"wake","seconds":600},{"dateTime":"2020-10-12T01:41:00.000","level":"light","seconds":60},{"dateTime":"2020-10-12T01:42:00.000","level":"deep","seconds":2340},...], "summary":{"deep":{"count":4,"minutes":63,"thirtyDayAvgMinutes":59},"light":{"count":27,"minutes":257,"thirtyDayAvgMinutes":364},"rem":{"count":5,"minutes":94,"thirtyDayAvgMinutes":58},"wake":{"count":24,"minutes":69,"thirtyDayAvgMinutes":95}}},"logId":26589710673,"minutesAfterWakeup":0,"minutesAsleep":415,"minutesAwake":68,"minutesToFallAsleep":0,"startTime":"2020-10-12T01:31:00.000","timeInBed":483,"type":"stages"}],"summary":{"stages":{"deep":63,"light":257,"rem":94,"wake":69},"totalMinutesAsleep":415,"totalSleepRecords":1,"totalTimeInBed":483}}
??? info "FITBIT_SLEEP_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| TYPE_EPISODE_ID | FLAG_TO_MUTATE |
| DURATION | FLAG_TO_MUTATE |
| IS_MAIN_SLEEP | FLAG_TO_MUTATE |
| TYPE | FLAG_TO_MUTATE |
| LEVEL | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_sleep_intraday_json.py
```
!!! note
Fitbit API has two versions for sleep data, v1 and v1.2, we support both.
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-10","duration":3600000,"efficiency":92,"endTime":"2020-10-10T16:37:00.000","infoCode":2,"isMainSleep":false,"levels":{"data":[{"dateTime":"2020-10-10T15:36:30.000","level":"restless","seconds":60},{"dateTime":"2020-10-10T15:37:30.000","level":"asleep","seconds":660},{"dateTime":"2020-10-10T15:48:30.000","level":"restless","seconds":60},...], "summary":{"asleep":{"count":0,"minutes":56},"awake":{"count":0,"minutes":0},"restless":{"count":3,"minutes":4}}},"logId":26315914306,"minutesAfterWakeup":0,"minutesAsleep":55,"minutesAwake":5,"minutesToFallAsleep":0,"startTime":"2020-10-10T15:36:30.000","timeInBed":60,"type":"classic"},{"dateOfSleep":"2020-10-10","duration":22980000,"efficiency":88,"endTime":"2020-10-10T08:10:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-10T01:46:30.000","level":"light","seconds":420},{"dateTime":"2020-10-10T01:53:30.000","level":"deep","seconds":1230},{"dateTime":"2020-10-10T02:14:00.000","level":"light","seconds":360},...], "summary":{"deep":{"count":3,"minutes":92,"thirtyDayAvgMinutes":0},"light":{"count":29,"minutes":193,"thirtyDayAvgMinutes":0},"rem":{"count":4,"minutes":33,"thirtyDayAvgMinutes":0},"wake":{"count":28,"minutes":65,"thirtyDayAvgMinutes":0}}},"logId":26311786557,"minutesAfterWakeup":0,"minutesAsleep":318,"minutesAwake":65,"minutesToFallAsleep":0,"startTime":"2020-10-10T01:46:30.000","timeInBed":383,"type":"stages"}],"summary":{"stages":{"deep":92,"light":193,"rem":33,"wake":65},"totalMinutesAsleep":373,"totalSleepRecords":2,"totalTimeInBed":443}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-11","duration":41640000,"efficiency":89,"endTime":"2020-10-11T11:47:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-11T00:12:30.000","level":"wake","seconds":450},{"dateTime":"2020-10-11T00:20:00.000","level":"light","seconds":870},{"dateTime":"2020-10-11T00:34:30.000","level":"wake","seconds":780},...], "summary":{"deep":{"count":4,"minutes":52,"thirtyDayAvgMinutes":62},"light":{"count":32,"minutes":442,"thirtyDayAvgMinutes":364},"rem":{"count":6,"minutes":68,"thirtyDayAvgMinutes":58},"wake":{"count":29,"minutes":132,"thirtyDayAvgMinutes":94}}},"logId":26589710670,"minutesAfterWakeup":1,"minutesAsleep":562,"minutesAwake":132,"minutesToFallAsleep":0,"startTime":"2020-10-11T00:12:30.000","timeInBed":694,"type":"stages"}],"summary":{"stages":{"deep":52,"light":442,"rem":68,"wake":132},"totalMinutesAsleep":562,"totalSleepRecords":1,"totalTimeInBed":694}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-12","duration":28980000,"efficiency":93,"endTime":"2020-10-12T09:34:30.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-12T01:31:00.000","level":"wake","seconds":600},{"dateTime":"2020-10-12T01:41:00.000","level":"light","seconds":60},{"dateTime":"2020-10-12T01:42:00.000","level":"deep","seconds":2340},...], "summary":{"deep":{"count":4,"minutes":63,"thirtyDayAvgMinutes":59},"light":{"count":27,"minutes":257,"thirtyDayAvgMinutes":364},"rem":{"count":5,"minutes":94,"thirtyDayAvgMinutes":58},"wake":{"count":24,"minutes":69,"thirtyDayAvgMinutes":95}}},"logId":26589710673,"minutesAfterWakeup":0,"minutesAsleep":415,"minutesAwake":68,"minutesToFallAsleep":0,"startTime":"2020-10-12T01:31:00.000","timeInBed":483,"type":"stages"}],"summary":{"stages":{"deep":63,"light":257,"rem":94,"wake":69},"totalMinutesAsleep":415,"totalSleepRecords":1,"totalTimeInBed":483}}
??? info "FITBIT_STEPS_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| STEPS | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_steps_summary_json.py
```
!!! note
`TIMESTAMP`, `LOCAL_DATE_TIME`, and `STEPS` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-07","value":"1775"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":5},{"time":"00:01:00","value":3},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-08","value":"3201"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":14},{"time":"00:01:00","value":11},{"time":"00:02:00","value":10},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-09","value":"998"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":0},{"time":"00:01:00","value":0},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_STEPS_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| STEPS | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_steps_intraday_json.py
```
!!! note
`TIMESTAMP`, `LOCAL_DATE_TIME`, and `STEPS` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by [Fitbit's API](https://dev.fitbit.com/build/reference/web-api/activity/#get-activity-intraday-time-series). See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-07","value":"1775"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":5},{"time":"00:01:00","value":3},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-08","value":"3201"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":14},{"time":"00:01:00","value":11},{"time":"00:02:00","value":10},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-09","value":"998"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":0},{"time":"00:01:00","value":0},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}

252
docs/snippets/jsonfitbit_format.md 100644
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@ -0,0 +1,252 @@
The `format.yaml` maps and transforms columns in your raw data stream to the [mandatory columns RAPIDS needs for Fitbit sensors](../mandatory-fitbit-format). This file is at:
```bash
src/data/streams/fitbitjson_csv/format.yaml
```
If you want RAPIDS to process Fitbit sensor data using this stream, you will need to map `DEVICE_ID` and `JSON_FITBIT_COLUMN` to your own raw data columns inside **each sensor** section in `format.yaml`.
??? info "FITBIT_HEARTRATE_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| HEARTRATE_DAILY_RESTINGHR | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESOUTOFRANGE | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESFATBURN | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESCARDIO | FLAG_TO_MUTATE |
| HEARTRATE_DAILY_CALORIESPEAK | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_heartrate_summary_json.py
```
!!! note
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the raw data RAPIDS expects for this data stream"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-07","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1200.6102,"max":88,"min":31,"minutes":1058,"name":"Out of Range"},{"caloriesOut":760.3020,"max":120,"min":86,"minutes":366,"name":"Fat Burn"},{"caloriesOut":15.2048,"max":146,"min":120,"minutes":2,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":72}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":68},{"time":"00:01:00","value":67},{"time":"00:02:00","value":67},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-08","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1100.1120,"max":89,"min":30,"minutes":921,"name":"Out of Range"},{"caloriesOut":660.0012,"max":118,"min":82,"minutes":361,"name":"Fat Burn"},{"caloriesOut":23.7088,"max":142,"min":108,"minutes":3,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":70}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":77},{"time":"00:01:00","value":75},{"time":"00:02:00","value":73},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-09","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":750.3615,"max":77,"min":30,"minutes":851,"name":"Out of Range"},{"caloriesOut":734.1516,"max":107,"min":77,"minutes":550,"name":"Fat Burn"},{"caloriesOut":131.8579,"max":130,"min":107,"minutes":29,"name":"Cardio"},{"caloriesOut":0,"max":220,"min":130,"minutes":0,"name":"Peak"}],"restingHeartRate":69}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":90},{"time":"00:01:00","value":89},{"time":"00:02:00","value":88},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_HEARTRATE_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| HEARTRATE | FLAG_TO_MUTATE |
| HEARTRATE_ZONE | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_heartrate_intraday_json.py
```
!!! note
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the raw data RAPIDS expects for this data stream"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-07","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1200.6102,"max":88,"min":31,"minutes":1058,"name":"Out of Range"},{"caloriesOut":760.3020,"max":120,"min":86,"minutes":366,"name":"Fat Burn"},{"caloriesOut":15.2048,"max":146,"min":120,"minutes":2,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":72}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":68},{"time":"00:01:00","value":67},{"time":"00:02:00","value":67},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-08","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1100.1120,"max":89,"min":30,"minutes":921,"name":"Out of Range"},{"caloriesOut":660.0012,"max":118,"min":82,"minutes":361,"name":"Fat Burn"},{"caloriesOut":23.7088,"max":142,"min":108,"minutes":3,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":70}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":77},{"time":"00:01:00","value":75},{"time":"00:02:00","value":73},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-09","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":750.3615,"max":77,"min":30,"minutes":851,"name":"Out of Range"},{"caloriesOut":734.1516,"max":107,"min":77,"minutes":550,"name":"Fat Burn"},{"caloriesOut":131.8579,"max":130,"min":107,"minutes":29,"name":"Cardio"},{"caloriesOut":0,"max":220,"min":130,"minutes":0,"name":"Peak"}],"restingHeartRate":69}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":90},{"time":"00:01:00","value":89},{"time":"00:02:00","value":88},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_SLEEP_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| LOCAL_START_DATE_TIME | FLAG_TO_MUTATE |
| LOCAL_END_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| EFFICIENCY | FLAG_TO_MUTATE |
| MINUTES_AFTER_WAKEUP | FLAG_TO_MUTATE |
| MINUTES_ASLEEP | FLAG_TO_MUTATE |
| MINUTES_AWAKE | FLAG_TO_MUTATE |
| MINUTES_TO_FALL_ASLEEP | FLAG_TO_MUTATE |
| MINUTES_IN_BED | FLAG_TO_MUTATE |
| IS_MAIN_SLEEP | FLAG_TO_MUTATE |
| TYPE | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_sleep_summary_json.py
```
!!! note
Fitbit API has two versions for sleep data, v1 and v1.2. We support both but ignore v1's `count_awake`, `duration_awake`, and `count_awakenings`, `count_restless`, `duration_restless` columns.
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-10","duration":3600000,"efficiency":92,"endTime":"2020-10-10T16:37:00.000","infoCode":2,"isMainSleep":false,"levels":{"data":[{"dateTime":"2020-10-10T15:36:30.000","level":"restless","seconds":60},{"dateTime":"2020-10-10T15:37:30.000","level":"asleep","seconds":660},{"dateTime":"2020-10-10T15:48:30.000","level":"restless","seconds":60},...], "summary":{"asleep":{"count":0,"minutes":56},"awake":{"count":0,"minutes":0},"restless":{"count":3,"minutes":4}}},"logId":26315914306,"minutesAfterWakeup":0,"minutesAsleep":55,"minutesAwake":5,"minutesToFallAsleep":0,"startTime":"2020-10-10T15:36:30.000","timeInBed":60,"type":"classic"},{"dateOfSleep":"2020-10-10","duration":22980000,"efficiency":88,"endTime":"2020-10-10T08:10:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-10T01:46:30.000","level":"light","seconds":420},{"dateTime":"2020-10-10T01:53:30.000","level":"deep","seconds":1230},{"dateTime":"2020-10-10T02:14:00.000","level":"light","seconds":360},...], "summary":{"deep":{"count":3,"minutes":92,"thirtyDayAvgMinutes":0},"light":{"count":29,"minutes":193,"thirtyDayAvgMinutes":0},"rem":{"count":4,"minutes":33,"thirtyDayAvgMinutes":0},"wake":{"count":28,"minutes":65,"thirtyDayAvgMinutes":0}}},"logId":26311786557,"minutesAfterWakeup":0,"minutesAsleep":318,"minutesAwake":65,"minutesToFallAsleep":0,"startTime":"2020-10-10T01:46:30.000","timeInBed":383,"type":"stages"}],"summary":{"stages":{"deep":92,"light":193,"rem":33,"wake":65},"totalMinutesAsleep":373,"totalSleepRecords":2,"totalTimeInBed":443}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-11","duration":41640000,"efficiency":89,"endTime":"2020-10-11T11:47:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-11T00:12:30.000","level":"wake","seconds":450},{"dateTime":"2020-10-11T00:20:00.000","level":"light","seconds":870},{"dateTime":"2020-10-11T00:34:30.000","level":"wake","seconds":780},...], "summary":{"deep":{"count":4,"minutes":52,"thirtyDayAvgMinutes":62},"light":{"count":32,"minutes":442,"thirtyDayAvgMinutes":364},"rem":{"count":6,"minutes":68,"thirtyDayAvgMinutes":58},"wake":{"count":29,"minutes":132,"thirtyDayAvgMinutes":94}}},"logId":26589710670,"minutesAfterWakeup":1,"minutesAsleep":562,"minutesAwake":132,"minutesToFallAsleep":0,"startTime":"2020-10-11T00:12:30.000","timeInBed":694,"type":"stages"}],"summary":{"stages":{"deep":52,"light":442,"rem":68,"wake":132},"totalMinutesAsleep":562,"totalSleepRecords":1,"totalTimeInBed":694}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-12","duration":28980000,"efficiency":93,"endTime":"2020-10-12T09:34:30.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-12T01:31:00.000","level":"wake","seconds":600},{"dateTime":"2020-10-12T01:41:00.000","level":"light","seconds":60},{"dateTime":"2020-10-12T01:42:00.000","level":"deep","seconds":2340},...], "summary":{"deep":{"count":4,"minutes":63,"thirtyDayAvgMinutes":59},"light":{"count":27,"minutes":257,"thirtyDayAvgMinutes":364},"rem":{"count":5,"minutes":94,"thirtyDayAvgMinutes":58},"wake":{"count":24,"minutes":69,"thirtyDayAvgMinutes":95}}},"logId":26589710673,"minutesAfterWakeup":0,"minutesAsleep":415,"minutesAwake":68,"minutesToFallAsleep":0,"startTime":"2020-10-12T01:31:00.000","timeInBed":483,"type":"stages"}],"summary":{"stages":{"deep":63,"light":257,"rem":94,"wake":69},"totalMinutesAsleep":415,"totalSleepRecords":1,"totalTimeInBed":483}}
??? info "FITBIT_SLEEP_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| TYPE_EPISODE_ID | FLAG_TO_MUTATE |
| DURATION | FLAG_TO_MUTATE |
| IS_MAIN_SLEEP | FLAG_TO_MUTATE |
| TYPE | FLAG_TO_MUTATE |
| LEVEL | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_sleep_intraday_json.py
```
!!! note
Fitbit API has two versions for sleep data, v1 and v1.2, we support both.
All columns except `DEVICE_ID` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-10","duration":3600000,"efficiency":92,"endTime":"2020-10-10T16:37:00.000","infoCode":2,"isMainSleep":false,"levels":{"data":[{"dateTime":"2020-10-10T15:36:30.000","level":"restless","seconds":60},{"dateTime":"2020-10-10T15:37:30.000","level":"asleep","seconds":660},{"dateTime":"2020-10-10T15:48:30.000","level":"restless","seconds":60},...], "summary":{"asleep":{"count":0,"minutes":56},"awake":{"count":0,"minutes":0},"restless":{"count":3,"minutes":4}}},"logId":26315914306,"minutesAfterWakeup":0,"minutesAsleep":55,"minutesAwake":5,"minutesToFallAsleep":0,"startTime":"2020-10-10T15:36:30.000","timeInBed":60,"type":"classic"},{"dateOfSleep":"2020-10-10","duration":22980000,"efficiency":88,"endTime":"2020-10-10T08:10:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-10T01:46:30.000","level":"light","seconds":420},{"dateTime":"2020-10-10T01:53:30.000","level":"deep","seconds":1230},{"dateTime":"2020-10-10T02:14:00.000","level":"light","seconds":360},...], "summary":{"deep":{"count":3,"minutes":92,"thirtyDayAvgMinutes":0},"light":{"count":29,"minutes":193,"thirtyDayAvgMinutes":0},"rem":{"count":4,"minutes":33,"thirtyDayAvgMinutes":0},"wake":{"count":28,"minutes":65,"thirtyDayAvgMinutes":0}}},"logId":26311786557,"minutesAfterWakeup":0,"minutesAsleep":318,"minutesAwake":65,"minutesToFallAsleep":0,"startTime":"2020-10-10T01:46:30.000","timeInBed":383,"type":"stages"}],"summary":{"stages":{"deep":92,"light":193,"rem":33,"wake":65},"totalMinutesAsleep":373,"totalSleepRecords":2,"totalTimeInBed":443}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-11","duration":41640000,"efficiency":89,"endTime":"2020-10-11T11:47:00.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-11T00:12:30.000","level":"wake","seconds":450},{"dateTime":"2020-10-11T00:20:00.000","level":"light","seconds":870},{"dateTime":"2020-10-11T00:34:30.000","level":"wake","seconds":780},...], "summary":{"deep":{"count":4,"minutes":52,"thirtyDayAvgMinutes":62},"light":{"count":32,"minutes":442,"thirtyDayAvgMinutes":364},"rem":{"count":6,"minutes":68,"thirtyDayAvgMinutes":58},"wake":{"count":29,"minutes":132,"thirtyDayAvgMinutes":94}}},"logId":26589710670,"minutesAfterWakeup":1,"minutesAsleep":562,"minutesAwake":132,"minutesToFallAsleep":0,"startTime":"2020-10-11T00:12:30.000","timeInBed":694,"type":"stages"}],"summary":{"stages":{"deep":52,"light":442,"rem":68,"wake":132},"totalMinutesAsleep":562,"totalSleepRecords":1,"totalTimeInBed":694}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"sleep":[{"dateOfSleep":"2020-10-12","duration":28980000,"efficiency":93,"endTime":"2020-10-12T09:34:30.000","infoCode":0,"isMainSleep":true,"levels":{"data":[{"dateTime":"2020-10-12T01:31:00.000","level":"wake","seconds":600},{"dateTime":"2020-10-12T01:41:00.000","level":"light","seconds":60},{"dateTime":"2020-10-12T01:42:00.000","level":"deep","seconds":2340},...], "summary":{"deep":{"count":4,"minutes":63,"thirtyDayAvgMinutes":59},"light":{"count":27,"minutes":257,"thirtyDayAvgMinutes":364},"rem":{"count":5,"minutes":94,"thirtyDayAvgMinutes":58},"wake":{"count":24,"minutes":69,"thirtyDayAvgMinutes":95}}},"logId":26589710673,"minutesAfterWakeup":0,"minutesAsleep":415,"minutesAwake":68,"minutesToFallAsleep":0,"startTime":"2020-10-12T01:31:00.000","timeInBed":483,"type":"stages"}],"summary":{"stages":{"deep":63,"light":257,"rem":94,"wake":69},"totalMinutesAsleep":415,"totalSleepRecords":1,"totalTimeInBed":483}}
??? info "FITBIT_STEPS_SUMMARY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| STEPS | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_steps_summary_json.py
```
!!! note
`TIMESTAMP`, `LOCAL_DATE_TIME`, and `STEPS` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by Fitbit's API. See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-07","value":"1775"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":5},{"time":"00:01:00","value":3},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-08","value":"3201"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":14},{"time":"00:01:00","value":11},{"time":"00:02:00","value":10},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-09","value":"998"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":0},{"time":"00:01:00","value":0},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
??? info "FITBIT_STEPS_INTRADAY"
**RAPIDS_COLUMN_MAPPINGS**
| RAPIDS column | Stream column |
|-----------------|-----------------|
| TIMESTAMP | FLAG_TO_MUTATE |
| DEVICE_ID | device_id |
| LOCAL_DATE_TIME | FLAG_TO_MUTATE |
| STEPS | FLAG_TO_MUTATE |
**MUTATION**
- **COLUMN_MAPPINGS**
| Script column | Stream column |
|-----------------|-----------------|
| JSON_FITBIT_COLUMN | fitbit_data |
- **SCRIPTS**
```bash
src/data/streams/mutations/fitbit/parse_steps_intraday_json.py
```
!!! note
`TIMESTAMP`, `LOCAL_DATE_TIME`, and `STEPS` are parsed from `JSON_FITBIT_COLUMN`. `JSON_FITBIT_COLUMN` is a string column containing the JSON objects returned by [Fitbit's API](https://dev.fitbit.com/build/reference/web-api/activity/#get-activity-intraday-time-series). See an example of the raw data RAPIDS expects for this data stream:
??? example "Example of the expected raw data"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-07","value":"1775"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":5},{"time":"00:01:00","value":3},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-08","value":"3201"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":14},{"time":"00:01:00","value":11},{"time":"00:02:00","value":10},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |"activities-steps":[{"dateTime":"2020-10-09","value":"998"}],"activities-steps-intraday":{"dataset":[{"time":"00:00:00","value":0},{"time":"00:01:00","value":0},{"time":"00:02:00","value":0},...],"datasetInterval":1,"datasetType":"minute"}}

37
src/data/streams/fitbitjson_csv/container.R 100644
View File

@ -0,0 +1,37 @@
# if you need a new package, you should add it with renv::install(package) so your renv venv is updated
library(readr)
#' @description
#' Gets the sensor data for a specific device id from a database table, file or whatever source you want to query
#'
#' @param stream_parameters The PHONE_STREAM_PARAMETERS key in config.yaml. If you need specific parameters add them there.
#' @param device A device ID string
#' @param sensor_container database table or file containing the sensor data for all participants. This is the PHONE_SENSOR[TABLE] key in config.yaml
#' @param columns the columns needed from this sensor (we recommend to only return these columns instead of every column in sensor_container)
#' @return A dataframe with the sensor data for device
pull_data <- function(stream_parameters, device, sensor, sensor_container, columns){
if(!dir.exists(stream_parameters$FOLDER))
stop("[FITBIT_DATA_STREAMS][fitbit_json_csv][FOLDER] does not exist: ", stream_parameters$FOLDER)
data_file <- file.path(stream_parameters$FOLDER, sensor_container)
if(!file.exists(data_file))
stop("The data container should be a CSV file but it does not exist: ", data_file)
if(!endsWith(data_file, ".csv"))
stop("The data container should be a CSV file: ", data_file)
# Letting the user know what we are doing
message(paste0("Reading this CSV file: ", data_file))
sensor_data <- read_csv_chunked(data_file,
callback = DataFrameCallback$new(function(x, pos) subset(x,x[[columns$DEVICE_ID]] == device, select = unlist(columns))), progress = T, chunk_size = 50000)
if(is.null(sensor_data)) # emtpy file
sensor_data <- read.csv(data_file)
if(nrow(sensor_data) == 0)
warning("The device '", device,"' did not have data in ", sensor_container)
return(sensor_data)
}

89
src/data/streams/fitbitjson_csv/format.yaml 100644
View File

@ -0,0 +1,89 @@
FITBIT_HEARTRATE_SUMMARY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
HEARTRATE_DAILY_RESTINGHR: FLAG_TO_MUTATE
HEARTRATE_DAILY_CALORIESOUTOFRANGE: FLAG_TO_MUTATE
HEARTRATE_DAILY_CALORIESFATBURN: FLAG_TO_MUTATE
HEARTRATE_DAILY_CALORIESCARDIO: FLAG_TO_MUTATE
HEARTRATE_DAILY_CALORIESPEAK: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_heartrate_summary_json.py
FITBIT_HEARTRATE_INTRADAY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
HEARTRATE: FLAG_TO_MUTATE
HEARTRATE_ZONE: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_heartrate_intraday_json.py
FITBIT_SLEEP_SUMMARY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
LOCAL_START_DATE_TIME: FLAG_TO_MUTATE
LOCAL_END_DATE_TIME: FLAG_TO_MUTATE
EFFICIENCY: FLAG_TO_MUTATE
MINUTES_AFTER_WAKEUP: FLAG_TO_MUTATE
MINUTES_ASLEEP: FLAG_TO_MUTATE
MINUTES_AWAKE: FLAG_TO_MUTATE
MINUTES_TO_FALL_ASLEEP: FLAG_TO_MUTATE
MINUTES_IN_BED: FLAG_TO_MUTATE
IS_MAIN_SLEEP: FLAG_TO_MUTATE
TYPE: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_sleep_summary_json.py
FITBIT_SLEEP_INTRADAY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
TYPE_EPISODE_ID: FLAG_TO_MUTATE
DURATION: FLAG_TO_MUTATE
IS_MAIN_SLEEP: FLAG_TO_MUTATE
TYPE: FLAG_TO_MUTATE
LEVEL: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_sleep_intraday_json.py
FITBIT_STEPS_SUMMARY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
STEPS: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_steps_summary_json.py
FITBIT_STEPS_INTRADAY:
RAPIDS_COLUMN_MAPPINGS:
TIMESTAMP: FLAG_TO_MUTATE
DEVICE_ID: device_id
LOCAL_DATE_TIME: FLAG_TO_MUTATE
STEPS: FLAG_TO_MUTATE
MUTATION:
COLUMN_MAPPINGS:
JSON_FITBIT_COLUMN: fitbit_data # string columnwith JSON objects
SCRIPTS: # List any python or r scripts that mutate your raw data
- src/data/streams/mutations/fitbit/parse_steps_intraday_json.py