Add initial testing files for call features

.travis.yml

@@ -38,7 +38,9 @@ jobs:
         - brew install r
         - R --version
         - brew cask install miniconda
-        - eval "$(/usr/local/bin/conda shell.bash hook)"
+        - which conda
+        - eval "$(/opt/miniconda3/condabin/conda shell.bash hook)"
+
       env:
         - RENV_PATHS_ROOT="$HOME/renv/cache"
       cache:

tests/Snakefile

@@ -14,6 +14,10 @@ rule all:
                             pid=config["PIDS"],
                             sms_type = config["SMS"]["TYPES"],
                             day_segment = config["SMS"]["DAY_SEGMENTS"]),
+        expand("data/processed/{pid}/call_{call_type}_{segment}.csv",
+                            pid=config["PIDS"], 
+                            call_type=config["CALLS"]["TYPES"],
+                            segment = config["CALLS"]["DAY_SEGMENTS"]),
 
 rule clean:
     shell:

tests/data/processed/test01/call_incoming_afternoon.csv

@@ -0,0 +1,2 @@
+"local_date","call_incoming_afternoon_count","call_incoming_afternoon_distinctcontacts","call_incoming_afternoon_meanduration","call_incoming_afternoon_sumduration","call_incoming_afternoon_minduration","call_incoming_afternoon_maxduration","call_incoming_afternoon_stdduration","call_incoming_afternoon_modeduration","call_incoming_afternoon_entropyduration","call_incoming_afternoon_timefirstcall","call_incoming_afternoon_timelastcall","call_incoming_afternoon_countmostfrequentcontact"
+"2020-06-01",3,2,642.666666666667,1928,213,1053,420.333597673721,1053,0.941278069255821,753,921,2

tests/data/processed/test01/call_incoming_daily.csv

@@ -0,0 +1,2 @@
+"local_date","call_incoming_daily_count","call_incoming_daily_distinctcontacts","call_incoming_daily_meanduration","call_incoming_daily_sumduration","call_incoming_daily_minduration","call_incoming_daily_maxduration","call_incoming_daily_stdduration","call_incoming_daily_modeduration","call_incoming_daily_entropyduration","call_incoming_daily_timefirstcall","call_incoming_daily_timelastcall","call_incoming_daily_countmostfrequentcontact"
+"2020-06-01",10,6,976.4,9764,213,1719,465.141603289913,439,2.18820020272087,163,1331,5

tests/data/processed/test01/call_incoming_evening.csv

@@ -0,0 +1,2 @@
+"local_date","call_incoming_evening_count","call_incoming_evening_distinctcontacts","call_incoming_evening_meanduration","call_incoming_evening_sumduration","call_incoming_evening_minduration","call_incoming_evening_maxduration","call_incoming_evening_stdduration","call_incoming_evening_modeduration","call_incoming_evening_entropyduration","call_incoming_evening_timefirstcall","call_incoming_evening_timelastcall","call_incoming_evening_countmostfrequentcontact"
+"2020-06-01",3,3,1366.66666666667,4100,1157,1719,306.963081384934,1157,1.08260122332248,1144,1331,1

tests/data/processed/test01/call_incoming_morning.csv

@@ -0,0 +1,2 @@
+"local_date","call_incoming_morning_count","call_incoming_morning_distinctcontacts","call_incoming_morning_meanduration","call_incoming_morning_sumduration","call_incoming_morning_minduration","call_incoming_morning_maxduration","call_incoming_morning_stdduration","call_incoming_morning_modeduration","call_incoming_morning_entropyduration","call_incoming_morning_timefirstcall","call_incoming_morning_timelastcall","call_incoming_morning_countmostfrequentcontact"
+"2020-06-01",2,2,983,1966,667,1299,446.891485709898,667,0.640802774623272,519,600,1

tests/data/processed/test01/call_incoming_night.csv

@@ -0,0 +1,2 @@
+"local_date","call_incoming_night_count","call_incoming_night_distinctcontacts","call_incoming_night_meanduration","call_incoming_night_sumduration","call_incoming_night_minduration","call_incoming_night_maxduration","call_incoming_night_stdduration","call_incoming_night_modeduration","call_incoming_night_entropyduration","call_incoming_night_timefirstcall","call_incoming_night_timelastcall","call_incoming_night_countmostfrequentcontact"
+"2020-06-01",2,1,885,1770,439,1331,630.7392488184,439,0.560434787927257,163,257,2

tests/data/processed/test01/call_missed_afternoon.csv

@@ -0,0 +1,2 @@
+"local_date","call_missed_afternoon_count","call_missed_afternoon_distinctcontacts","call_missed_afternoon_timefirstcall","call_missed_afternoon_timelastcall","call_missed_afternoon_countmostfrequentcontact"
+"2020-06-01",1,1,874,874,1

tests/data/processed/test01/call_missed_daily.csv

@@ -0,0 +1,2 @@
+"local_date","call_missed_daily_count","call_missed_daily_distinctcontacts","call_missed_daily_timefirstcall","call_missed_daily_timelastcall","call_missed_daily_countmostfrequentcontact"
+"2020-06-01",6,3,13,1167,4

tests/data/processed/test01/call_missed_evening.csv

@@ -0,0 +1,2 @@
+"local_date","call_missed_evening_count","call_missed_evening_distinctcontacts","call_missed_evening_timefirstcall","call_missed_evening_timelastcall","call_missed_evening_countmostfrequentcontact"
+"2020-06-01",1,1,1167,1167,1

tests/data/processed/test01/call_missed_morning.csv

@@ -0,0 +1,2 @@
+"local_date","call_missed_morning_count","call_missed_morning_distinctcontacts","call_missed_morning_timefirstcall","call_missed_morning_timelastcall","call_missed_morning_countmostfrequentcontact"
+"2020-06-01",1,1,589,589,1

tests/data/processed/test01/call_missed_night.csv

@@ -0,0 +1,2 @@
+"local_date","call_missed_night_count","call_missed_night_distinctcontacts","call_missed_night_timefirstcall","call_missed_night_timelastcall","call_missed_night_countmostfrequentcontact"
+"2020-06-01",3,1,13,257,3

tests/data/processed/test01/call_outgoing_afternoon.csv

@@ -0,0 +1,2 @@
+"local_date","call_outgoing_afternoon_count","call_outgoing_afternoon_distinctcontacts","call_outgoing_afternoon_meanduration","call_outgoing_afternoon_sumduration","call_outgoing_afternoon_minduration","call_outgoing_afternoon_maxduration","call_outgoing_afternoon_stdduration","call_outgoing_afternoon_modeduration","call_outgoing_afternoon_entropyduration","call_outgoing_afternoon_timefirstcall","call_outgoing_afternoon_timelastcall","call_outgoing_afternoon_countmostfrequentcontact"
+"2020-06-01",2,2,1237.5,2475,1186,1289,72.8319984622144,1289,0.692482998176928,869,1051,1

tests/data/processed/test01/call_outgoing_daily.csv

@@ -0,0 +1,2 @@
+"local_date","call_outgoing_daily_count","call_outgoing_daily_distinctcontacts","call_outgoing_daily_meanduration","call_outgoing_daily_sumduration","call_outgoing_daily_minduration","call_outgoing_daily_maxduration","call_outgoing_daily_stdduration","call_outgoing_daily_modeduration","call_outgoing_daily_entropyduration","call_outgoing_daily_timefirstcall","call_outgoing_daily_timelastcall","call_outgoing_daily_countmostfrequentcontact"
+"2020-06-01",8,6,1168,9344,759,1543,250.842010607702,970,2.05922274128194,172,1277,3

tests/data/processed/test01/call_outgoing_evening.csv

@@ -0,0 +1,2 @@
+"local_date","call_outgoing_evening_count","call_outgoing_evening_distinctcontacts","call_outgoing_evening_meanduration","call_outgoing_evening_sumduration","call_outgoing_evening_minduration","call_outgoing_evening_maxduration","call_outgoing_evening_stdduration","call_outgoing_evening_modeduration","call_outgoing_evening_entropyduration","call_outgoing_evening_timefirstcall","call_outgoing_evening_timelastcall","call_outgoing_evening_countmostfrequentcontact"
+"2020-06-01",2,2,1482,2964,1421,1543,86.2670273047588,1421,0.692468534923961,1156,1277,1

tests/data/processed/test01/call_outgoing_morning.csv

@@ -0,0 +1,2 @@
+"local_date","call_outgoing_morning_count","call_outgoing_morning_distinctcontacts","call_outgoing_morning_meanduration","call_outgoing_morning_sumduration","call_outgoing_morning_minduration","call_outgoing_morning_maxduration","call_outgoing_morning_stdduration","call_outgoing_morning_modeduration","call_outgoing_morning_entropyduration","call_outgoing_morning_timefirstcall","call_outgoing_morning_timelastcall","call_outgoing_morning_countmostfrequentcontact"
+"2020-06-01",3,3,978.333333333333,2935,759,1116,192.000868053593,1116,1.08558305836162,418,687,1

tests/data/processed/test01/call_outgoing_night.csv

@@ -0,0 +1,2 @@
+"local_date","call_outgoing_night_count","call_outgoing_night_distinctcontacts","call_outgoing_night_meanduration","call_outgoing_night_sumduration","call_outgoing_night_minduration","call_outgoing_night_maxduration","call_outgoing_night_stdduration","call_outgoing_night_modeduration","call_outgoing_night_entropyduration","call_outgoing_night_timefirstcall","call_outgoing_night_timelastcall","call_outgoing_night_countmostfrequentcontact"
+"2020-06-01",1,1,970,970,970,970,NA,970,0,172,172,1

tests/data/raw/test01/calls_raw.csv

@@ -0,0 +1,25 @@
+timestamp,device_id,call_type,call_duration,trace
+1591020025000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1299,OwyykjwekUUwhaCHEODWV5lZICBzdyLPnTE2wVL5
+1591019365000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,OwyykjwekUUwhaCHEODWV5lZICBzdyLPnTE2wVL5
+1591009125000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1116,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1591014777000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1060,cnUUS8QfrJ16VB6cakgg7IBWGP2OFzpJ7xlBAG8S
+1591025270000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,759,1RgyLrcxRB4kPDTpszr6ocy2qtxvtyoTGl1WltUF
+1591015194000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,667,JGtSHqWU2rTwJsHNzFiAzHUNHHYLYNUKjrGmB7G4
+1591039261000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,213,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1591036173000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1289,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1591036460000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,0AF00XrOYBKFnoU9s1lZQBMCDyVWwIUu7t9FishN
+1591030751000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,662,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1591029194000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1053,6qWi08psbtFbnl0GxVYlAoG7e9X81JfYggNULsFh
+1591047100000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1186,6uW0vSbblda04AgPYlUMjaOBJ6vHdoeyCVy2xMcE
+1591052691000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1157,jVa0Xjl53p52AStkexUSNzJYHgcDihBWFeBmsAzr
+1591056859000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1719,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1591053398000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1421,YTCSxqJMuECsKhqaTr6uH8xd5qIKNpGCJGvv9W0y
+1591063906000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1224,ekgS3LcK86nxkl3O9jzA3BWU5tJMiYHPbRsdHS2P
+1591060637000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,1543,TjnOnOjHqcE2q2yzzwfcFoZfaIKN6VylfqkD0Zk7
+1591054046000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590987442000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590984805000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590999462000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,1331,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590994337000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,2,970,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590999471000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,3,0,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP
+1590993791000,e64uobDo-xNh0-KxYR-UWgR-utH2eyav204r,1,439,ciXg3DYB9bzl0KXxPcvxi50Z4NqSk0WVf7dLniNP

tests/settings/config.yaml

@@ -2,4 +2,4 @@ directory: ./
 configfile: ./tests/settings/testing_config.yaml
 snakefile: ./tests/Snakefile
 cores: 1
-forcerun: sms_features
+forcerun: [sms_features, call_features]

tests/settings/testing_config.yaml

@@ -1,5 +1,5 @@
 # Valid database table name
-SENSORS: [messages]
+SENSORS: [messages, calls]
 
 # Test Participant data to include in the unit testing
 # You must create a file for each participant
@@ -8,7 +8,7 @@ PIDS: [test01]
 
 # Global var with common day segments
 DAY_SEGMENTS: &day_segments
-    [daily]
+  [daily, morning, afternoon, evening, night]
 
 # Communication SMS features config, TYPES and FEATURES keys need to match
 SMS:
@@ -17,3 +17,12 @@ SMS:
     received: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
     sent: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
   DAY_SEGMENTS: *day_segments  
+
+# Communication call features config, TYPES and FEATURES keys need to match
+CALLS:
+  TYPES: [missed, incoming, outgoing]
+  FEATURES:
+    missed:  [count, distinctcontacts, timefirstcall, timelastcall, countmostfrequentcontact]
+    incoming: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
+    outgoing: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
+  DAY_SEGMENTS: *day_segments