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Minor updates to config and Snakefile

pull/103/head
JulioV 2020-10-28 14:03:02 -04:00
parent 84068ab33c
commit 8f74d3f3b7
2 changed files with 15 additions and 15 deletions
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2
Snakefile
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@ -132,7 +132,7 @@ for provider in config["PHONE_CONVERSATION"]["PROVIDERS"].keys():
for provider in config["PHONE_LOCATIONS"]["PROVIDERS"].keys():
if config["PHONE_LOCATIONS"]["PROVIDERS"][provider]["COMPUTE"]:
if config["PHONE_LOCATIONS"]["LOCATIONS_TO_USE"] == "RESAMPLE_FUSED":
if config["PHONE_LOCATIONS"]["LOCATIONS_TO_USE"] == "FUSED_RESAMPLED":
if "PHONE_LOCATIONS" in config["PHONE_VALID_SENSED_BINS"]["PHONE_SENSORS"]:
files_to_compute.extend(expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]))
else:

28
config.yaml
View File

@ -1,5 +1,5 @@
# Participants to include in the analysis
# You must create a file for each participant named pXXX containing their device_id. This can be done manually or automatically
# You must create a participant file per person manually or automatically (see PARTICIPANT_FILES below)
PIDS: [test01]
# Use tz codes from https://en.wikipedia.org/wiki/List_of_tz_database_time_zones. Double check your code, for example EST is not US Eastern Time.
@ -9,7 +9,7 @@ TIMEZONE: &timezone
DATABASE_GROUP: &database_group
MY_GROUP
# run 'snakemake -j1 create_participants_files'
# To create your participant files from the aware_device table or a csv file change config below and run 'snakemake -j1 create_participants_files'
CREATE_PARTICIPANT_FILES:
SOURCE:
TYPE: AWARE_DEVICE_TABLE #AWARE_DEVICE_TABLE or CSV_FILE
@ -256,12 +256,12 @@ PHONE_CONVERSATION:
################################################################################
FITBIT_HEARTRATE:
TABLE_FORMAT: JSON # JSON or CSV
TABLE_FORMAT: JSON # JSON or CSV. If your JSON or CSV data are files change [SENSOR_DATA][FITBIT][SOURCE][TYPE] to FILES
TABLE:
JSON: fitbit_heartrate
CSV:
SUMMARY: heartrate_summary.csv
INTRADAY: heartrate_intraday.csv
SUMMARY: heartrate_summary
INTRADAY: heartrate_intraday
PROVIDERS:
RAPIDS:
COMPUTE: False
@ -273,12 +273,12 @@ FITBIT_HEARTRATE:
FITBIT_STEPS:
TABLE_FORMAT: JSON # JSON or CSV
TABLE_FORMAT: JSON # JSON or CSV. If your JSON or CSV data are files change [SENSOR_DATA][FITBIT][SOURCE][TYPE] to FILES
TABLE:
JSON: fitbit_steps
CSV:
SUMMARY: steps_summary.csv
INTRADAY: steps_intraday.csv
SUMMARY: steps_summary
INTRADAY: steps_intraday
EXCLUDE_SLEEP: # you can exclude sleep periods from the step features computation
EXCLUDE: False
TYPE: FIXED # FIXED OR FITBIT_BASED (configure FITBIT_SLEEP section)
@ -297,12 +297,12 @@ FITBIT_STEPS:
INCLUDE_ZERO_STEP_ROWS: False
FITBIT_SLEEP:
TABLE_FORMAT: JSON # JSON or CSV
TABLE_FORMAT: JSON # JSON or CSV. If your JSON or CSV data are files change [SENSOR_DATA][FITBIT][SOURCE][TYPE] to FILES
TABLE:
JSON: fitbit_sleep
CSV:
SUMMARY: sleep_summary.csv
INTRADAY: sleep_intraday.csv
SUMMARY: sleep_summary
INTRADAY: sleep_intraday
PROVIDERS:
RAPIDS:
COMPUTE: False
@ -310,12 +310,12 @@ FITBIT_SLEEP:
SUMMARY_FEATURES: ["sumdurationafterwakeup", "sumdurationasleep", "sumdurationawake", "sumdurationtofallasleep", "sumdurationinbed", "avgefficiency", "countepisode"]
FITBIT_CALORIES:
TABLE_FORMAT: JSON # JSON or CSV
TABLE_FORMAT: JSON # JSON or CSV. If your JSON or CSV data are files change [SENSOR_DATA][FITBIT][SOURCE][TYPE] to FILES
TABLE:
JSON: fitbit_calories
CSV:
SUMMARY: calories_summary.csv
INTRADAY: calories_intraday.csv
SUMMARY: calories_summary
INTRADAY: calories_intraday
PROVIDERS:
RAPIDS:
COMPUTE: False