From 89a834e7b15efaf481a497bf495db89e5b6507d9 Mon Sep 17 00:00:00 2001 From: JulioV Date: Wed, 30 Oct 2019 17:45:32 -0400 Subject: [PATCH] Migrate from pip to conda virtual env --- environment.yml | 94 ++++++++++++++++++++++++++++++++++++++++++++++++ requirements.txt | 48 ------------------------- 2 files changed, 94 insertions(+), 48 deletions(-) create mode 100644 environment.yml delete mode 100644 requirements.txt diff --git a/environment.yml b/environment.yml new file mode 100644 index 00000000..f4b2656b --- /dev/null +++ b/environment.yml @@ -0,0 +1,94 @@ +name: moshi-env +channels: + - defaults + - conda-forge +dependencies: + - appdirs=1.4.3=py37h28b3542_0 + - arrow=0.15.2=py37_0 + - asn1crypto=1.2.0=py37_0 + - attrs=19.3.0=py_0 + - binaryornot=0.4.4=py_1 + - blas=1.0=mkl + - bzip2=1.0.8=h01d97ff_1 + - ca-certificates=2019.10.16=0 + - certifi=2019.9.11=py37_0 + - cffi=1.13.1=py37h33e799b_0 + - chardet=3.0.4=py37_1003 + - click=7.0=py37_0 + - cookiecutter=1.6.0=py37_1000 + - cryptography=2.7=py37h212c5bf_0 + - datrie=0.8=py37h1de35cc_0 + - docutils=0.15.2=py37_0 + - future=0.18.1=py37_0 + - gitdb2=2.0.6=py_0 + - gitpython=3.0.4=py_0 + - idna=2.8=py37_0 + - importlib_metadata=0.23=py37_0 + - intel-openmp=2019.4=233 + - jinja2=2.10.3=py_0 + - jinja2-time=0.2.0=py_2 + - jsonschema=3.1.1=py37_0 + - libcxx=9.0.0=h89e68fa_1 + - libffi=3.2.1=h6de7cb9_1006 + - libgfortran=3.0.1=0 + - markupsafe=1.1.1=py37h1de35cc_0 + - mkl=2019.4=233 + - mkl-service=2.3.0=py37hfbe908c_0 + - mkl_fft=1.0.14=py37h5e564d8_0 + - mkl_random=1.1.0=py37ha771720_0 + - more-itertools=7.2.0=py37_0 + - ncurses=6.1=h0a44026_1002 + - numpy=1.17.2=py37h99e6662_0 + - numpy-base=1.17.2=py37h6575580_0 + - openssl=1.1.1d=h1de35cc_3 + - pandas=0.25.2=py37h0a44026_0 + - pbr=5.4.3=py_0 + - pip=19.3.1=py37_0 + - plotly=4.2.1=py_0 + - poyo=0.5.0=py_0 + - psutil=5.6.3=py37h1de35cc_0 + - pycparser=2.19=py37_1 + - pyopenssl=19.0.0=py37_0 + - pyrsistent=0.15.4=py37h1de35cc_0 + - pysocks=1.7.1=py37_0 + - python=3.7.3=h93065d6_1 + - python-dateutil=2.8.0=py37_0 + - pytz=2019.3=py_0 + - pyyaml=5.1.2=py37h1de35cc_0 + - readline=8.0=hcfe32e1_0 + - requests=2.22.0=py37_1 + - retrying=1.3.3=py37_2 + - setuptools=41.6.0=py37_0 + - six=1.12.0=py37_0 + - smmap2=2.0.5=py37_0 + - sqlite=3.30.1=h93121df_0 + - tk=8.6.9=h2573ce8_1003 + - urllib3=1.25.6=py37_0 + - wheel=0.33.6=py37_0 + - whichcraft=0.6.1=py_0 + - wrapt=1.11.2=py37h1de35cc_0 + - xz=5.2.4=h1de35cc_1001 + - yaml=0.1.7=h1de35cc_1001 + - zipp=0.6.0=py_0 + - zlib=1.2.11=h0b31af3_1006 + - pip: + - appdirs==1.4.3 + - attrs==19.3.0 + - configargparse==0.15.1 + - datrie==0.8 + - docutils==0.15.2 + - gitdb2==2.0.6 + - gitpython==3.0.4 + - importlib-metadata==0.23 + - jsonschema==3.1.1 + - more-itertools==7.2.0 + - psutil==5.6.3 + - pyrsistent==0.15.5 + - pyyaml==5.1.2 + - ratelimiter==1.2.0.post0 + - smmap2==2.0.5 + - snakemake==5.7.1 + - wrapt==1.11.2 + - zipp==0.6.0 +prefix: /usr/local/Caskroom/miniconda/base/envs/moshi-env + diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 50494a1f..00000000 --- a/requirements.txt +++ /dev/null @@ -1,48 +0,0 @@ -appdirs==1.4.3 -arrow==0.15.2 -attrs==19.3.0 -binaryornot==0.4.4 -certifi==2019.9.11 -chardet==3.0.4 -Click==7.0 -ConfigArgParse==0.15.1 -cookiecutter==1.6.0 -datrie==0.8 -docutils==0.15.2 -future==0.18.1 -gitdb2==2.0.6 -GitPython==3.0.4 -idna==2.8 -importlib-metadata==0.23 -Jinja2==2.10.3 -jinja2-time==0.2.0 -jsonschema==3.1.1 -MarkupSafe==1.1.1 -mkl-fft==1.0.14 -mkl-random==1.1.0 -mkl-service==2.3.0 -more-itertools==7.2.0 -numpy==1.17.2 -pandas==0.25.2 -pbr==5.4.3 -plotly==4.2.1 -poyo==0.5.0 -psutil==5.6.3 -pyrsistent==0.15.4 -python-dateutil==2.8.0 -pytz==2019.3 -PyYAML==5.1.2 -ratelimiter==1.2.0.post0 -requests==2.22.0 -retrying==1.3.3 -six==1.12.0 -smmap2==2.0.5 -snakemake==5.7.1 -stevedore==1.31.0 -urllib3==1.25.6 -virtualenv==16.7.7 -virtualenv-clone==0.5.3 -virtualenvwrapper==4.8.4 -whichcraft==0.6.1 -wrapt==1.11.2 -zipp==0.6.0