Initial Travis test

.travis.yml

@@ -0,0 +1,34 @@
+language: python
+python:
+  - "3.7"
+
+before_install:
+  - R -e 'install.packages(c( "rmarkdown"), repos = "http://cran.us.r-project.org")'
+
+before_script:
+  # Install Packrat 
+  - snakemake packrat_install
+  - snakemake packrat_init
+  - snakemake packrat_restore
+
+install:
+  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+  - bash miniconda.sh -b -p $HOME/miniconda
+  - source "$HOME/miniconda/bin:$PATH"
+  - hash -r
+  - conda config --set always_yes yes --set changeps1 no
+  - conda update -q conda
+  # Useful for debugging any issues with conda
+  - conda info -a
+
+  # Replace dep1 dep2 ... with your dependencies
+  - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
+  - conda activate test-environment
+
+services: 
+  - mysql
+
+script:
+  - cp -r tests/data/raw/* data/raw
+  - snakemake --profile tests/settings -R sensor_features
+  - ./env/bin/python -m unittest discover tests/scripts/ -v

tests/scripts/utils.py

@@ -59,7 +59,6 @@ def generate_file_list(configs, sensor):
             for each in configs[sensor_cap]['TYPES']:
                 sensor_type.append(each+'_')
 
-    
     act_file_list = expand(act_str,pid=configs["PIDS"],
                                    sensor = sensor,
                                    sensor_type = sensor_type,
@@ -77,7 +76,7 @@ def generate_sensor_file_lists(configs):
     # Go through the configs and select those sensors with DAY_SEGMENTS,
     # optionally TYPES then create expected files Return dictionary with 
     # list of file paths of expected and actual files for each sensor 
-    # listed in the config file. 
+    # listed in the config file. Added for Travis.
     
     # Initialize string of file path for both expected and actual metric values
     act_str = "data/processed/{pid}/{sensor}_{sensor_type}{day_segment}.csv"