From 88743b9a14d3b1352797d344b6a357507f42f88d Mon Sep 17 00:00:00 2001 From: JulioV Date: Thu, 3 Dec 2020 12:48:32 -0500 Subject: [PATCH] Update rule to create analysis workflow participant files --- rules/preprocessing.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/rules/preprocessing.smk b/rules/preprocessing.smk index 82c65ede..13aa7fcd 100644 --- a/rules/preprocessing.smk +++ b/rules/preprocessing.smk @@ -11,9 +11,9 @@ rule restore_sql_file: rule create_example_participant_files: output: - expand("data/external/{pid}", pid = ["example01", "example02"]) + expand("data/external/participant_files/{pid}.yaml", pid = ["example01", "example02"]) shell: - "echo 'a748ee1a-1d0b-4ae9-9074-279a2b6ba524\nandroid\ntest01\n2020/04/23,2020/05/04\n' >> ./data/external/example01 && echo '13dbc8a3-dae3-4834-823a-4bc96a7d459d\nios\ntest02\n2020/04/23,2020/05/04\n' >> ./data/external/example02" + "echo 'PHONE:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n PLATFORMS: [android]\n LABEL: test01\n START_DATE: 2020/04/23\n END_DATE: 2020/05/04\nFITBIT:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n LABEL: test01\n START_DATE: 2020/04/23\n END_DATE: 2020/05/04\n' >> ./data/external/participant_files/example01.yaml && echo 'PHONE:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n PLATFORMS: [ios]\n LABEL: test02\n START_DATE: 2020/04/23\n END_DATE: 2020/05/04\nFITBIT:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n LABEL: test02\n START_DATE: 2020/04/23\n END_DATE: 2020/05/04\n' >> ./data/external/participant_files/example02.yaml" rule create_participants_files: input: