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Fix count active/sedentary bout bug

pull/95/head
Meng Li 2020-06-05 14:33:23 -04:00
parent bdcaf5a9c1
commit 7a32acdd45
1 changed files with 2 additions and 5 deletions
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7
src/features/fitbit_step_features.py
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@ -32,9 +32,6 @@ else:
#Sedentary Bout when you have less than 10 steps in a minute #Sedentary Bout when you have less than 10 steps in a minute
#Active Bout when you have greater or equal to 10 steps in a minute #Active Bout when you have greater or equal to 10 steps in a minute
resampledData['active_sedentary'] = np.where(resampledData['steps']<int(threshold_active_bout),'sedentary','active') resampledData['active_sedentary'] = np.where(resampledData['steps']<int(threshold_active_bout),'sedentary','active')
activeData = resampledData[resampledData['active_sedentary']=="active"]
sedentaryData = resampledData[resampledData['active_sedentary']=="sedentary"]
#Time Calculations of sedentary/active bouts: #Time Calculations of sedentary/active bouts:
resampledData['active_sedentary_groups'] = (resampledData.active_sedentary != resampledData.active_sedentary.shift()).cumsum().values resampledData['active_sedentary_groups'] = (resampledData.active_sedentary != resampledData.active_sedentary.shift()).cumsum().values
@ -65,10 +62,10 @@ else:
finalDataset["step_" + str(day_segment) + "_stdallsteps"] = resampledData['steps'].resample('D').std() finalDataset["step_" + str(day_segment) + "_stdallsteps"] = resampledData['steps'].resample('D').std()
if("countsedentarybout" in sedentary_bout): if("countsedentarybout" in sedentary_bout):
finalDataset["step_" + str(day_segment) + "_countsedentarybout"] = sedentaryData['active_sedentary'].resample('D').count() finalDataset["step_" + str(day_segment) + "_countsedentarybout"] = resampledData[resampledData["active_sedentary"] == "sedentary"]["active_sedentary_groups"].resample("D").nunique()
if("countactivebout" in active_bout): if("countactivebout" in active_bout):
finalDataset["step_" + str(day_segment) + "_countactivebout"] = activeData['active_sedentary'].resample('D').count() finalDataset["step_" + str(day_segment) + "_countactivebout"] = resampledData[resampledData["active_sedentary"] == "active"]["active_sedentary_groups"].resample("D").nunique()
if("maxdurationsedentarybout" in sedentary_bout): if("maxdurationsedentarybout" in sedentary_bout):
finalDataset["step_" + str(day_segment) + "_maxdurationsedentarybout"] = statsMinutes[statsMinutes['active_sedentary']=='sedentary']['max'] finalDataset["step_" + str(day_segment) + "_maxdurationsedentarybout"] = statsMinutes[statsMinutes['active_sedentary']=='sedentary']['max']