Fix bug of params in Snakefile for days_to_analyse
parent
5696b4f6d4
commit
77d41639d8
|
@ -10,10 +10,10 @@ rule all:
|
|||
input:
|
||||
# My study (this is an example of a rule created specifically for a study)
|
||||
expand("data/interim/{pid}/days_to_analyse_{days_before_surgery}_{days_in_hospital}_{days_after_discharge}.csv",
|
||||
pid=config["PIDS"],
|
||||
days_before_surgery = config["PARAMS_FOR_ANALYSIS"]["DAYS_BEFORE_SURGERY"],
|
||||
days_after_discharge= config["PARAMS_FOR_ANALYSIS"]["DAYS_AFTER_DISCHARGE"],
|
||||
days_in_hospital= config["PARAMS_FOR_ANALYSIS"]["DAYS_IN_HOSPITAL"]),
|
||||
pid = config["PIDS"],
|
||||
days_before_surgery = config["PARAMS_FOR_ANALYSIS"]["DAYS_TO_ANALYSE"]["DAYS_BEFORE_SURGERY"],
|
||||
days_after_discharge = config["PARAMS_FOR_ANALYSIS"]["DAYS_TO_ANALYSE"]["DAYS_AFTER_DISCHARGE"],
|
||||
days_in_hospital = config["PARAMS_FOR_ANALYSIS"]["DAYS_TO_ANALYSE"]["DAYS_IN_HOSPITAL"]),
|
||||
expand("data/processed/{pid}/targets_{summarised}.csv",
|
||||
pid = config["PIDS"],
|
||||
summarised = config["PARAMS_FOR_ANALYSIS"]["SUMMARISED"]),
|
||||
|
|
Loading…
Reference in New Issue