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Update default settings of example_config.yaml

pull/95/head
Meng Li 2020-08-07 14:55:02 -04:00
parent b04088f11f
commit 6ea4f5a39e
1 changed files with 7 additions and 7 deletions
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example_profile/example_config.yaml
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@ -36,7 +36,7 @@ PHONE_VALID_SENSED_BINS:
PHONE_VALID_SENSED_DAYS: PHONE_VALID_SENSED_DAYS:
COMPUTE: False COMPUTE: False
MIN_VALID_HOURS_PER_DAY: &min_valid_hours_per_day [16] # (out of 24) MIN_HOURS_PER_DAY MIN_VALID_HOURS_PER_DAY: &min_valid_hours_per_day [16, 20] # (out of 24) MIN_HOURS_PER_DAY
MIN_VALID_BINS_PER_HOUR: &min_valid_bins_per_hour [6] # (out of 60min/BIN_SIZE bins) MIN_VALID_BINS_PER_HOUR: &min_valid_bins_per_hour [6] # (out of 60min/BIN_SIZE bins)
# Communication SMS features config, TYPES and FEATURES keys need to match # Communication SMS features config, TYPES and FEATURES keys need to match
@ -243,12 +243,12 @@ OVERALL_COMPLIANCE_HEATMAP:
### Example Analysis ################################################################ ### Example Analysis ################################################################
PARAMS_FOR_ANALYSIS: PARAMS_FOR_ANALYSIS:
COMPUTE: False COMPUTE: True
GROUNDTRUTH_TABLE: participant_info GROUNDTRUTH_TABLE: participant_info
TARGET_TABLE: participant_target TARGET_TABLE: participant_target
SOURCES: &sources ["phone_features", "fitbit_features", "phone_fitbit_features"] SOURCES: &sources ["phone_features", "fitbit_features", "phone_fitbit_features"]
DAY_SEGMENTS: *day_segments DAY_SEGMENTS: *day_segments
PHONE_FEATURES: [accelerometer, activity_recognition, applications_foreground, battery, bluetooth, calls_incoming, calls_missed, calls_outgoing, conversation, light, location_doryab, messages_received, messages_sent, screen] PHONE_FEATURES: [accelerometer, activity_recognition, applications_foreground, battery, bluetooth, calls_incoming, calls_missed, calls_outgoing, conversation, light, location_doryab, messages_received, messages_sent, screen, wifi]
FITBIT_FEATURES: [fitbit_heartrate, fitbit_step, fitbit_sleep] FITBIT_FEATURES: [fitbit_heartrate, fitbit_step, fitbit_sleep]
PHONE_FITBIT_FEATURES: "" # This array is merged in the input_merge_features_of_single_participant function in models.snakefile PHONE_FITBIT_FEATURES: "" # This array is merged in the input_merge_features_of_single_participant function in models.snakefile
DEMOGRAPHIC_FEATURES: [age, gender, inpatientdays] DEMOGRAPHIC_FEATURES: [age, gender, inpatientdays]
@ -269,11 +269,11 @@ PARAMS_FOR_ANALYSIS:
DAYS_AFTER_DISCHARGE: 5 #7 DAYS_AFTER_DISCHARGE: 5 #7
# Cleaning Parameters # Cleaning Parameters
COLS_NAN_THRESHOLD: [0.3] #[0.1, 0.3, 0.5] COLS_NAN_THRESHOLD: [0.1, 0.3]
COLS_VAR_THRESHOLD: True COLS_VAR_THRESHOLD: True
ROWS_NAN_THRESHOLD: [0.3] #[0.1, 0.3, 0.5] ROWS_NAN_THRESHOLD: [0.1, 0.3]
PARTICIPANT_DAYS_BEFORE_THRESHOLD: 3 #7 PARTICIPANT_DAYS_BEFORE_THRESHOLD: 3
PARTICIPANT_DAYS_AFTER_THRESHOLD: 2 #4 PARTICIPANT_DAYS_AFTER_THRESHOLD: 3
# Extract summarised features from daily features with any of the following substrings # Extract summarised features from daily features with any of the following substrings
NUMERICAL_OPERATORS: ["count", "sum", "length", "avg", "restinghr"] NUMERICAL_OPERATORS: ["count", "sum", "length", "avg", "restinghr"]