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rapids
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update dockerfile - rmarkdown

pull/95/head
Agam 2020-08-28 15:33:44 -04:00
parent 29eb56155e
commit 6cbd73c676
1 changed files with 4 additions and 0 deletions
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@ -17,10 +17,12 @@ RUN apt install -y git
RUN apt-get update && apt-get install -y vim RUN apt-get update && apt-get install -y vim
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH /opt/conda/bin:$PATH ENV PATH /opt/conda/bin:$PATH
RUN apt-get update --fix-missing && \ RUN apt-get update --fix-missing && \
apt-get install -y wget bzip2 ca-certificates curl git && \ apt-get install -y wget bzip2 ca-certificates curl git && \
apt-get clean && \ apt-get clean && \
rm -rf /var/lib/apt/lists/* rm -rf /var/lib/apt/lists/*
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \ RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \
/bin/bash ~/miniconda.sh -b -p /opt/conda && \ /bin/bash ~/miniconda.sh -b -p /opt/conda && \
rm ~/miniconda.sh && \ rm ~/miniconda.sh && \
@ -28,6 +30,7 @@ RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
echo "conda activate base" >> ~/.bashrc echo "conda activate base" >> ~/.bashrc
ENV TINI_VERSION v0.16.1 ENV TINI_VERSION v0.16.1
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
RUN chmod +x /usr/bin/tini RUN chmod +x /usr/bin/tini
@ -37,6 +40,7 @@ CMD [ "/bin/bash" ]
RUN conda update -n base -c defaults conda RUN conda update -n base -c defaults conda
WORKDIR /rapids WORKDIR /rapids
RUN conda env create -f environment.yml -n rapids RUN conda env create -f environment.yml -n rapids
RUN Rscript --vanilla -e 'install.packages("rmarkdown", repos="http://cran.us.r-project.org")'
RUN R -e 'renv::restore()' RUN R -e 'renv::restore()'
COPY rapids_example.sql ./data/external COPY rapids_example.sql ./data/external
RUN echo "source activate rapids" > ~/.bashrc RUN echo "source activate rapids" > ~/.bashrc