Updated R and Python package files. Updated README.

README.md

@@ -16,11 +16,55 @@ By [MoSHI](https://www.moshi.pitt.edu/), [University of Pittsburgh](https://www.
 
 For RAPIDS installation refer to to the [documentation](https://www.rapids.science/1.8/setup/installation/)
 
+## For the installation of the Docker version
+
+1. Follow the [instructions](https://www.rapids.science/1.8/setup/installation/) to setup RAPIDS via Docker (from scratch).
+
+2. Delete current contents in /rapids/ folder when in a container session.
+    ```
+    cd ..
+    rm -rf rapids/{*,.*}
+    cd rapids
+    ```
+
+3. Clone RAPIDS workspace from Git and checkout a specific branch.
+    ```
+    git clone "https://repo.ijs.si/junoslukan/rapids.git" .
+    git checkout <branch_name>
+    ```
+
+4. Install missing “libpq-dev” dependency with bash.
+    ```
+    apt-get update -y
+    apt-get install -y libpq-dev
+    ```
+
+5. Restore R venv.
+Type R to go to the interactive R session and then:
+    ```
+    renv::restore()
+    ```
+
+6. Install cr-features module 
+From: https://repo.ijs.si/matjazbostic/calculatingfeatures.git -> branch calculations_for_rapids. 
+Then follow the CalculatingFeatures section below.  
+
+7. Install all required packages from environment.yml, prune also deletes conda packages not present in environment file.
+conda env update --file environment.yml –prune
+
+8. If you wish to update your R or Python venvs.
+    ```
+    R interactive session – renv::snapshot()
+    Python: conda env export --no-builds | sed 's/^.*libgfortran.*$/  - libgfortran/' | sed 's/^.*mkl=.*$/  - mkl/' >  environment.ym
+    ```
+
 ## CalculatingFeatures
 
 This RAPIDS extension uses CalculatingFeatures library accessible [here](https://repo.ijs.si/matjazbostic/calculatingfeatures).
 
 To use CalculatingFeatures library:
+- For now, use the "modifications_for_rapids" branch to get the newest version of cr-features that is functional for RAPIDS-STRAW analysis.
+
 - Follow the installation instructions in the [README.md](https://repo.ijs.si/matjazbostic/calculatingfeatures/-/blob/master/README.md).
 
 - Copy built calculatingfeatures folder into the RAPIDS workspace.
@@ -28,5 +72,6 @@ To use CalculatingFeatures library:
 - Install the CalculatingFeatures package by:
     ```
     pip install "path/to/the/calculatingfeatures/folder"
+    e.g. "./calculatingfeatures" if the folder is copied to main parent directory
     CalculatingFeatures package has to be built and installed everytime to get the newest version.
     ```

environment.yml

@@ -111,7 +111,7 @@ dependencies:
     - biosppy==0.8.0
     - cached-property==1.5.2
     - configargparse==0.15.1
-    - cr-features==0.1.15
+    - cr-features==0.1.20
     - cycler==0.11.0
     - decorator==4.4.2
     - fonttools==4.33.2

renv.lock

@@ -111,7 +111,7 @@
       "Package": "Rcpp",
       "Version": "1.0.7",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "dab19adae4440ae55aa8a9d238b246bb"
     },
     "RcppArmadillo": {
@@ -356,7 +356,7 @@
       "Package": "dbplyr",
       "Version": "2.1.1",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "1f37fa4ab2f5f7eded42f78b9a887182"
     },
     "desc": {
@@ -405,7 +405,7 @@
       "Package": "ellipsis",
       "Version": "0.3.2",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "bb0eec2fe32e88d9e2836c2f73ea2077"
     },
     "entropy": {
@@ -566,7 +566,7 @@
       "Package": "gower",
       "Version": "0.2.2",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "be6a2b3529928bd803d1c437d1d43152"
     },
     "graphlayouts": {
@@ -615,7 +615,7 @@
       "Package": "hms",
       "Version": "1.1.1",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "5b8a2dd0fdbe2ab4f6081e6c7be6dfca"
     },
     "htmlTable": {
@@ -888,7 +888,7 @@
       "Package": "parallelly",
       "Version": "1.29.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "b5f399c9ce96977e22ef32c20b6cfe87"
     },
     "pbapply": {
@@ -1000,7 +1000,7 @@
       "Package": "progressr",
       "Version": "0.9.0",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "ca0d80ecc29903f7579edbabd91f4199"
     },
     "promises": {
@@ -1343,7 +1343,7 @@
       "Package": "vctrs",
       "Version": "0.3.8",
       "Source": "Repository",
-      "Repository": "RSPM",
+      "Repository": "CRAN",
       "Hash": "ecf749a1b39ea72bd9b51b76292261f1"
     },
     "viridis": {