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Second order features standardization in config.yaml.

sociality-task
primoz 2022-06-07 10:39:48 +00:00
parent 2c7ac21465
commit 64e41cfa35
1 changed files with 12 additions and 7 deletions
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19
config.yaml
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@ -3,7 +3,7 @@
######################################################################################################################## ########################################################################################################################
# See https://www.rapids.science/latest/setup/configuration/#participant-files # See https://www.rapids.science/latest/setup/configuration/#participant-files
PIDS: [p02] #p01, p02, p03] PIDS: [p031] #p01, p02, p03]
# See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files # See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files
CREATE_PARTICIPANT_FILES: CREATE_PARTICIPANT_FILES:
@ -183,7 +183,7 @@ PHONE_CALLS:
CONTAINER: call CONTAINER: call
PROVIDERS: PROVIDERS:
RAPIDS: RAPIDS:
COMPUTE: False COMPUTE: True
FEATURES_TYPE: EPISODES # EVENTS or EPISODES FEATURES_TYPE: EPISODES # EVENTS or EPISODES
CALL_TYPES: [missed, incoming, outgoing] CALL_TYPES: [missed, incoming, outgoing]
FEATURES: FEATURES:
@ -484,12 +484,13 @@ EMPATICA_ACCELEROMETER:
FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"] FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"]
SRC_SCRIPT: src/features/empatica_accelerometer/dbdp/main.py SRC_SCRIPT: src/features/empatica_accelerometer/dbdp/main.py
CR: CR:
COMPUTE: False COMPUTE: True
FEATURES: ["totalMagnitudeBand", "absoluteMeanBand", "varianceBand"] # Acc features FEATURES: ["totalMagnitudeBand", "absoluteMeanBand", "varianceBand"] # Acc features
WINDOWS: WINDOWS:
COMPUTE: True COMPUTE: True
WINDOW_LENGTH: 15 # specify window length in seconds WINDOW_LENGTH: 15 # specify window length in seconds
SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min'] SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min']
STANDARDIZE_SO_FEATURES: True
SRC_SCRIPT: src/features/empatica_accelerometer/cr/main.py SRC_SCRIPT: src/features/empatica_accelerometer/cr/main.py
@ -498,7 +499,7 @@ EMPATICA_HEARTRATE:
CONTAINER: HR CONTAINER: HR
PROVIDERS: PROVIDERS:
DBDP: DBDP:
COMPUTE: False COMPUTE: True
FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr"] FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr"]
SRC_SCRIPT: src/features/empatica_heartrate/dbdp/main.py SRC_SCRIPT: src/features/empatica_heartrate/dbdp/main.py
@ -511,13 +512,14 @@ EMPATICA_TEMPERATURE:
FEATURES: ["maxtemp", "mintemp", "avgtemp", "mediantemp", "modetemp", "stdtemp", "diffmaxmodetemp", "diffminmodetemp", "entropytemp"] FEATURES: ["maxtemp", "mintemp", "avgtemp", "mediantemp", "modetemp", "stdtemp", "diffmaxmodetemp", "diffminmodetemp", "entropytemp"]
SRC_SCRIPT: src/features/empatica_temperature/dbdp/main.py SRC_SCRIPT: src/features/empatica_temperature/dbdp/main.py
CR: CR:
COMPUTE: False COMPUTE: True
FEATURES: ["countAboveMean", "countBelowMean", "maximum", "minimum", "meanAbsChange", "longestStrikeAboveMean", "longestStrikeBelowMean", FEATURES: ["maximum", "minimum", "meanAbsChange", "longestStrikeAboveMean", "longestStrikeBelowMean",
"stdDev", "median", "meanChange", "sumSquared", "squareSumOfComponent", "sumOfSquareComponents"] "stdDev", "median", "meanChange", "sumSquared", "squareSumOfComponent", "sumOfSquareComponents"]
WINDOWS: WINDOWS:
COMPUTE: True COMPUTE: True
WINDOW_LENGTH: 300 # specify window length in seconds WINDOW_LENGTH: 300 # specify window length in seconds
SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min'] SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min']
STANDARDIZE_SO_FEATURES: True
SRC_SCRIPT: src/features/empatica_temperature/cr/main.py SRC_SCRIPT: src/features/empatica_temperature/cr/main.py
# See https://www.rapids.science/latest/features/empatica-electrodermal-activity/ # See https://www.rapids.science/latest/features/empatica-electrodermal-activity/
@ -529,7 +531,7 @@ EMPATICA_ELECTRODERMAL_ACTIVITY:
FEATURES: ["maxeda", "mineda", "avgeda", "medianeda", "modeeda", "stdeda", "diffmaxmodeeda", "diffminmodeeda", "entropyeda"] FEATURES: ["maxeda", "mineda", "avgeda", "medianeda", "modeeda", "stdeda", "diffmaxmodeeda", "diffminmodeeda", "entropyeda"]
SRC_SCRIPT: src/features/empatica_electrodermal_activity/dbdp/main.py SRC_SCRIPT: src/features/empatica_electrodermal_activity/dbdp/main.py
CR: CR:
COMPUTE: False COMPUTE: True
FEATURES: ['mean', 'std', 'q25', 'q75', 'qd', 'deriv', 'power', 'numPeaks', 'ratePeaks', 'powerPeaks', 'sumPosDeriv', 'propPosDeriv', 'derivTonic', FEATURES: ['mean', 'std', 'q25', 'q75', 'qd', 'deriv', 'power', 'numPeaks', 'ratePeaks', 'powerPeaks', 'sumPosDeriv', 'propPosDeriv', 'derivTonic',
'sigTonicDifference', 'freqFeats','maxPeakAmplitudeChangeBefore', 'maxPeakAmplitudeChangeAfter', 'avgPeakAmplitudeChangeBefore', 'sigTonicDifference', 'freqFeats','maxPeakAmplitudeChangeBefore', 'maxPeakAmplitudeChangeAfter', 'avgPeakAmplitudeChangeBefore',
'avgPeakAmplitudeChangeAfter', 'avgPeakChangeRatio', 'maxPeakIncreaseTime', 'maxPeakDecreaseTime', 'maxPeakDuration', 'maxPeakChangeRatio', 'avgPeakAmplitudeChangeAfter', 'avgPeakChangeRatio', 'maxPeakIncreaseTime', 'maxPeakDecreaseTime', 'maxPeakDuration', 'maxPeakChangeRatio',
@ -539,6 +541,7 @@ EMPATICA_ELECTRODERMAL_ACTIVITY:
COMPUTE: True COMPUTE: True
WINDOW_LENGTH: 60 # specify window length in seconds WINDOW_LENGTH: 60 # specify window length in seconds
SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min'] SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min']
STANDARDIZE_SO_FEATURES: True
SRC_SCRIPT: src/features/empatica_electrodermal_activity/cr/main.py SRC_SCRIPT: src/features/empatica_electrodermal_activity/cr/main.py
# See https://www.rapids.science/latest/features/empatica-blood-volume-pulse/ # See https://www.rapids.science/latest/features/empatica-blood-volume-pulse/
@ -557,6 +560,7 @@ EMPATICA_BLOOD_VOLUME_PULSE:
COMPUTE: True COMPUTE: True
WINDOW_LENGTH: 300 # specify window length in seconds WINDOW_LENGTH: 300 # specify window length in seconds
SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min'] SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min']
STANDARDIZE_SO_FEATURES: True
SRC_SCRIPT: src/features/empatica_blood_volume_pulse/cr/main.py SRC_SCRIPT: src/features/empatica_blood_volume_pulse/cr/main.py
# See https://www.rapids.science/latest/features/empatica-inter-beat-interval/ # See https://www.rapids.science/latest/features/empatica-inter-beat-interval/
@ -576,6 +580,7 @@ EMPATICA_INTER_BEAT_INTERVAL:
COMPUTE: True COMPUTE: True
WINDOW_LENGTH: 300 # specify window length in seconds WINDOW_LENGTH: 300 # specify window length in seconds
SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min'] SECOND_ORDER_FEATURES: ['mean', 'median', 'sd', 'max', 'min']
STANDARDIZE_SO_FEATURES: True
SRC_SCRIPT: src/features/empatica_inter_beat_interval/cr/main.py SRC_SCRIPT: src/features/empatica_inter_beat_interval/cr/main.py
# See https://www.rapids.science/latest/features/empatica-tags/ # See https://www.rapids.science/latest/features/empatica-tags/