Added testing for screen features (android)

2020-06-17 16:23:00 -04:00 · 2020-06-17 16:23:00 -04:00 · 5627a73a67
parent 08a78f6622
commit 5627a73a67
11 changed files with 70 additions and 3 deletions
--- a/tests/Snakefile
+++ b/tests/Snakefile
@ -10,6 +10,8 @@ rule all:
    input:
        expand("data/raw/{pid}/{sensor}_raw.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
        expand("data/raw/{pid}/{sensor}_with_datetime.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
+        expand("data/processed/{pid}/screen_deltas.csv", pid=config["PIDS"]),
+        expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]),
        expand("data/processed/{pid}/sms_{sms_type}_{day_segment}.csv",
                            pid=config["PIDS"],
                            sms_type = config["SMS"]["TYPES"],
@ -18,6 +20,9 @@ rule all:
                            pid=config["PIDS"], 
                            call_type=config["CALLS"]["TYPES"],
                            segment = config["CALLS"]["DAY_SEGMENTS"]),
+        expand("data/processed/{pid}/screen_{day_segment}.csv",
+                            pid = config["PIDS"],
+                            day_segment = config["SCREEN"]["DAY_SEGMENTS"]),

 rule clean:
    shell:
--- a/tests/data/processed/test01/screen_afternoon.csv
+++ b/tests/data/processed/test01/screen_afternoon.csv
@ -0,0 +1,2 @@
+local_date,screen_afternoon_countepisodeunlock,screen_afternoon_episodepersensedminutesunlock,screen_afternoon_sumdurationunlock,screen_afternoon_maxdurationunlock,screen_afternoon_mindurationunlock,screen_afternoon_avgdurationunlock,screen_afternoon_stddurationunlock,screen_afternoon_firstuseafter00unlock
+2020-06-01,3,0.06,30.08298333333333,12.55,8.533333333333333,10.02766111111111,2.1968176781889985,43200
--- a/tests/data/processed/test01/screen_daily.csv
+++ b/tests/data/processed/test01/screen_daily.csv
@ -0,0 +1,2 @@
+local_date,screen_daily_countepisodeunlock,screen_daily_episodepersensedminutesunlock,screen_daily_sumdurationunlock,screen_daily_maxdurationunlock,screen_daily_mindurationunlock,screen_daily_avgdurationunlock,screen_daily_stddurationunlock,screen_daily_firstuseafter00unlock
+2020-06-01,7,0.04,94.60658333333333,21.6598833333333,5.9910166666666695,13.51522619047619,6.19241804679586,10230
--- a/tests/data/processed/test01/screen_deltas.csv
+++ b/tests/data/processed/test01/screen_deltas.csv
@ -0,0 +1,8 @@
+"episode_id","episode","screen_sequence","time_diff","local_start_date_time","local_end_date_time","local_start_date","local_end_date","local_start_day_segment","local_end_day_segment"
+3,"unlock","3, 0",5.99101666666667,"2020-06-01 02:50:30","2020-06-01 02:56:30","2020-06-01","2020-06-01","night","night"
+7,"unlock","3, 0",6.99016666666667,"2020-06-01 05:56:51","2020-06-01 06:03:51","2020-06-01","2020-06-01","night","morning"
+11,"unlock","3, 0",21.6598833333333,"2020-06-01 10:00:24","2020-06-01 10:22:04","2020-06-01","2020-06-01","morning","morning"
+15,"unlock","3, 0",14.9953833333333,"2020-06-01 11:57:33","2020-06-01 12:12:33","2020-06-01","2020-06-01","morning","afternoon"
+19,"unlock","3, 0",8.99965,"2020-06-01 14:51:02","2020-06-01 15:00:02","2020-06-01","2020-06-01","afternoon","afternoon"
+23,"unlock","3, 0",16.9834166666667,"2020-06-01 17:51:27","2020-06-01 18:08:26","2020-06-01","2020-06-01","afternoon","evening"
+27,"unlock","3, 0",18.9870666666667,"2020-06-01 20:42:58","2020-06-01 21:01:58","2020-06-01","2020-06-01","evening","evening"
--- a/tests/data/processed/test01/screen_evening.csv
+++ b/tests/data/processed/test01/screen_evening.csv
@ -0,0 +1,2 @@
+local_date,screen_evening_countepisodeunlock,screen_evening_episodepersensedminutesunlock,screen_evening_sumdurationunlock,screen_evening_maxdurationunlock,screen_evening_mindurationunlock,screen_evening_avgdurationunlock,screen_evening_stddurationunlock,screen_evening_firstuseafter00unlock
+2020-06-01,2,0.044444444444444446,27.420400000000033,18.9870666666667,8.433333333333334,13.710200000000016,7.462616406834528,64800
--- a/tests/data/processed/test01/screen_morning.csv
+++ b/tests/data/processed/test01/screen_morning.csv
@ -0,0 +1,2 @@
+local_date,screen_morning_countepisodeunlock,screen_morning_episodepersensedminutesunlock,screen_morning_sumdurationunlock,screen_morning_maxdurationunlock,screen_morning_mindurationunlock,screen_morning_avgdurationunlock,screen_morning_stddurationunlock,screen_morning_firstuseafter00unlock
+2020-06-01,3,0.06666666666666667,27.943216666666636,21.6598833333333,2.433333333333333,9.314405555555545,10.714935943920263,21600
--- a/tests/data/processed/test01/screen_night.csv
+++ b/tests/data/processed/test01/screen_night.csv
@ -0,0 +1,2 @@
+local_date,screen_night_countepisodeunlock,screen_night_episodepersensedminutesunlock,screen_night_sumdurationunlock,screen_night_maxdurationunlock,screen_night_mindurationunlock,screen_night_avgdurationunlock,screen_night_stddurationunlock,screen_night_firstuseafter00unlock
+2020-06-01,2,0.05714285714285714,9.124350000000003,5.9910166666666695,3.1333333333333333,4.562175000000002,2.0206872634837794,10230
--- a/tests/data/raw/test01/screen_raw.csv
+++ b/tests/data/raw/test01/screen_raw.csv
@ -0,0 +1,29 @@
+timestamp,device_id,screen_status
+1590994230386,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1590994230688,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1590994590149,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1590994590775,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591005411491,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591005411795,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591005831205,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591005831699,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591020022531,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591020024938,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591021324531,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591021324957,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591027053231,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591027053831,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591027953554,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591027953954,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591037462155,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591037462512,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591038002491,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591038002938,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591048286712,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591048287050,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591049306055,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591049306405,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
+1591058578480,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,1
+1591058578811,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,3
+1591059718035,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,0
+1591059718492,wYESbVwI-4GfR-G5I6-7iKL-tOmCKs02MBun,2
--- a/tests/scripts/run_tests.sh
+++ b/tests/scripts/run_tests.sh
@ -1,9 +1,18 @@
 #!/bin/bash
 # Commmands necessary to setup and run the tests for RAPIDS

+echo Setting up for testing...
+
+echo Copying files...
 cp -r tests/data/raw/* data/raw
 cp tests/data/external/* data/external
+
+echo Disabling downloading of dataset...
 sed -e '10,20 s/^/#/' -e  's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.snakefile > tmp
 cp tmp rules/preprocessing.snakefile
+
+echo Disabling downloading of dataset...
 snakemake --profile tests/settings
+
+echo Running tests on data produced...
 python -m unittest discover tests/scripts/ -v 
--- a/tests/settings/config.yaml
+++ b/tests/settings/config.yaml
@ -2,4 +2,4 @@ directory: ./
 configfile: ./tests/settings/testing_config.yaml
 snakefile: ./tests/Snakefile
 cores: 1
-forcerun: [sms_features, call_features]
+forcerun: [sms_features, call_features, screen_features]
--- a/tests/settings/testing_config.yaml
+++ b/tests/settings/testing_config.yaml
@ -1,5 +1,5 @@
 # Valid database table name
-SENSORS: [messages, calls]
+SENSORS: [messages, calls, screen]

 # Test Participant data to include in the unit testing
 # You must create a file for each participant
@ -26,3 +26,9 @@ CALLS:
    incoming: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
    outgoing: [count, distinctcontacts, meanduration, sumduration, minduration, maxduration, stdduration, modeduration, entropyduration, timefirstcall, timelastcall, countmostfrequentcontact]
  DAY_SEGMENTS: *day_segments
+
+SCREEN:
+  DAY_SEGMENTS: *day_segments
+  REFERENCE_HOUR_FIRST_USE: 0
+  FEATURES_DELTAS: ["countepisode", "episodepersensedminutes", "sumduration", "maxduration", "minduration", "avgduration", "stdduration", "firstuseafter"]
+  EPISODE_TYPES: ["unlock"]