Updated sms sensor to messages
parent
17f41588d8
commit
533d0adab3
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@ -37,8 +37,8 @@ MESSAGES:
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DB_TABLE: messages
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TYPES : [received, sent]
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FEATURES:
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received: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
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sent: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
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received: [count, distinctcontacts, timefirstmessage, timelastmessage, countmostfrequentcontact]
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sent: [count, distinctcontacts, timefirstmessage, timelastmessage, countmostfrequentcontact]
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DAY_SEGMENTS: *day_segments
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# Communication call features config, TYPES and FEATURES keys need to match
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@ -107,8 +107,8 @@ Name Units Description
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========================= ========= =============
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count messages Number of messages of type ``messages_type`` that occurred during a particular ``day_segment``.
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distinctcontacts contacts Number of distinct contacts that are associated with a particular ``messages_type`` during a particular ``day_segment``.
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timefirstsms minutes Number of minutes between 12:00am (midnight) and the first ``message`` of a particular ``messages_type``.
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timelastsms minutes Number of minutes between 12:00am (midnight) and the last ``message`` of a particular ``messages_type``.
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timefirstmessages minutes Number of minutes between 12:00am (midnight) and the first ``message`` of a particular ``messages_type``.
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timelastmessages minutes Number of minutes between 12:00am (midnight) and the last ``message`` of a particular ``messages_type``.
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countmostfrequentcontact messages Number of messages from the contact with the most messages of ``messages_type`` during a ``day_segment`` throughout the whole dataset of each participant.
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========================= ========= =============
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@ -120,7 +120,7 @@ countmostfrequentcontact messages Number of messages from the contact wi
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...
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TYPES: [sent]
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FEATURES:
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sent: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
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sent: [count, distinctcontacts, timefirstmessages, timelastmessages, countmostfrequentcontact]
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.. _call-sensor-doc:
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@ -747,7 +747,7 @@ unknownexpectedfraction Ration between minutesunknown an
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========================= ================= =============
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**Assumptions/Observations:**
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N/A
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.. ------------------------------- Begin Fitbit Section ----------------------------------- ..
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@ -9,51 +9,51 @@ filter_by_day_segment <- function(data, day_segment) {
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return(data %>% head(0))
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}
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base_sms_features <- function(sms, sms_type, day_segment, requested_features){
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base_messages_features <- function(messages, messages_type, day_segment, requested_features){
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# Output dataframe
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features = data.frame(local_date = character(), stringsAsFactors = FALSE)
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# The name of the features this function can compute
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base_features_names <- c("countmostfrequentcontact", "count", "distinctcontacts", "timefirstsms", "timelastsms")
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base_features_names <- c("countmostfrequentcontact", "count", "distinctcontacts", "timefirstmessage", "timelastmessage")
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# The subset of requested features this function can compute
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features_to_compute <- intersect(base_features_names, requested_features)
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# Filter rows that belong to the sms type and day segment of interest
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sms <- sms %>% filter(message_type == ifelse(sms_type == "received", "1", ifelse(sms_type == "sent", 2, NA))) %>%
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# Filter rows that belong to the message type and day segment of interest
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messages <- messages %>% filter(message_type == ifelse(messages_type == "received", "1", ifelse(messages_type == "sent", 2, NA))) %>%
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filter_by_day_segment(day_segment)
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# If there are not features or data to work with, return an empty df with appropiate columns names
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if(length(features_to_compute) == 0)
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return(features)
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if(nrow(sms) < 1)
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return(cbind(features, read.csv(text = paste(paste("sms", sms_type, day_segment, features_to_compute, sep = "_"), collapse = ","), stringsAsFactors = FALSE)))
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if(nrow(messages) < 1)
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return(cbind(features, read.csv(text = paste(paste("messages", messages_type, day_segment, features_to_compute, sep = "_"), collapse = ","), stringsAsFactors = FALSE)))
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for(feature_name in features_to_compute){
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if(feature_name == "countmostfrequentcontact"){
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# Get the number of messages for the most frequent contact throughout the study
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mostfrequentcontact <- sms %>%
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mostfrequentcontact <- messages %>%
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group_by(trace) %>%
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mutate(N=n()) %>%
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ungroup() %>%
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filter(N == max(N)) %>%
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head(1) %>% # if there are multiple contacts with the same amount of messages pick the first one only
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pull(trace)
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feature <- sms %>%
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feature <- messages %>%
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filter(trace == mostfrequentcontact) %>%
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group_by(local_date) %>%
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summarise(!!paste("sms", sms_type, day_segment, feature_name, sep = "_") := n()) %>%
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summarise(!!paste("messages", messages_type, day_segment, feature_name, sep = "_") := n()) %>%
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replace(is.na(.), 0)
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features <- merge(features, feature, by="local_date", all = TRUE)
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} else {
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feature <- sms %>%
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feature <- messages %>%
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group_by(local_date)
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feature <- switch(feature_name,
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"count" = feature %>% summarise(!!paste("sms", sms_type, day_segment, feature_name, sep = "_") := n()),
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"distinctcontacts" = feature %>% summarise(!!paste("sms", sms_type, day_segment, feature_name, sep = "_") := n_distinct(trace)),
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"timefirstsms" = feature %>% summarise(!!paste("sms", sms_type, day_segment, feature_name, sep = "_") := first(local_hour) * 60 + first(local_minute)),
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"timelastsms" = feature %>% summarise(!!paste("sms", sms_type, day_segment, feature_name, sep = "_") := last(local_hour) * 60 + last(local_minute)))
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"count" = feature %>% summarise(!!paste("messages", messages_type, day_segment, feature_name, sep = "_") := n()),
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"distinctcontacts" = feature %>% summarise(!!paste("messages", messages_type, day_segment, feature_name, sep = "_") := n_distinct(trace)),
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"timefirstmessage" = feature %>% summarise(!!paste("messages", messages_type, day_segment, feature_name, sep = "_") := first(local_hour) * 60 + first(local_minute)),
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"timelastmessage" = feature %>% summarise(!!paste("messages", messages_type, day_segment, feature_name, sep = "_") := last(local_hour) * 60 + last(local_minute)))
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features <- merge(features, feature, by="local_date", all = TRUE)
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}
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@ -1,20 +1,20 @@
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# If you want to implement extra features, source(..) a new file and duplicate the line "features <- merge(...)", then
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# swap base_sms_features(...) for your own function
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# swap base_sms_features(...) for your own function
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source("renv/activate.R")
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source("src/features/messages/messages_base.R")
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library(dplyr, warn.conflicts = FALSE)
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sms <- read.csv(snakemake@input[[1]])
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messages <- read.csv(snakemake@input[[1]])
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day_segment <- snakemake@params[["day_segment"]]
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requested_features <- snakemake@params[["features"]]
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sms_type <- snakemake@params[["messages_type"]]
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messages_type <- snakemake@params[["messages_type"]]
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features <- data.frame(local_date = character(), stringsAsFactors = FALSE)
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# Compute base SMS features
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features <- merge(features, base_sms_features(sms, sms_type, day_segment, requested_features), by="local_date", all = TRUE)
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features <- merge(features, base_messages_features(messages, messages_type, day_segment, requested_features), by="local_date", all = TRUE)
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if(ncol(features) != length(requested_features) + 1)
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stop(paste0("The number of features in the output dataframe (=", ncol(features),") does not match the expected value (=", length(requested_features)," + 1). Verify your SMS feature extraction functions"))
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stop(paste0("The number of features in the output dataframe (=", ncol(features),") does not match the expected value (=", length(requested_features)," + 1). Verify your Messages (SMS) feature extraction functions"))
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write.csv(features, snakemake@output[[1]], row.names = FALSE)
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@ -1,2 +1,2 @@
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"local_date","sms_received_afternoon_countmostfrequentcontact","sms_received_afternoon_count","sms_received_afternoon_distinctcontacts","sms_received_afternoon_timefirstsms","sms_received_afternoon_timelastsms"
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"local_date","messages_received_afternoon_countmostfrequentcontact","messages_received_afternoon_count","messages_received_afternoon_distinctcontacts","messages_received_afternoon_timefirstmessage","messages_received_afternoon_timelastmessage"
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"2020-05-28",1,2,2,830,949
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@ -1,3 +1,3 @@
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"local_date","sms_received_daily_countmostfrequentcontact","sms_received_daily_count","sms_received_daily_distinctcontacts","sms_received_daily_timefirstsms","sms_received_daily_timelastsms"
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"local_date","messages_received_daily_countmostfrequentcontact","messages_received_daily_count","messages_received_daily_distinctcontacts","messages_received_daily_timefirstmessage","messages_received_daily_timelastmessage"
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"2020-05-28",7,12,6,6,1382
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"2020-05-29",3,6,4,401,1382
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@ -1,3 +1,3 @@
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"local_date","sms_received_evening_countmostfrequentcontact","sms_received_evening_count","sms_received_evening_distinctcontacts","sms_received_evening_timefirstsms","sms_received_evening_timelastsms"
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"local_date","messages_received_evening_countmostfrequentcontact","messages_received_evening_count","messages_received_evening_distinctcontacts","messages_received_evening_timefirstmessage","messages_received_evening_timelastmessage"
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"2020-05-28",2,3,2,1173,1382
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"2020-05-29",2,3,2,1173,1382
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@ -1,3 +1,3 @@
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"local_date","sms_received_morning_countmostfrequentcontact","sms_received_morning_count","sms_received_morning_distinctcontacts","sms_received_morning_timefirstsms","sms_received_morning_timelastsms"
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"local_date","messages_received_morning_countmostfrequentcontact","messages_received_morning_count","messages_received_morning_distinctcontacts","messages_received_morning_timefirstmessage","messages_received_morning_timelastmessage"
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"2020-05-28",1,3,3,401,660
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"2020-05-29",1,3,3,401,660
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@ -1,2 +1,2 @@
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"local_date","sms_received_night_countmostfrequentcontact","sms_received_night_count","sms_received_night_distinctcontacts","sms_received_night_timefirstsms","sms_received_night_timelastsms"
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"local_date","messages_received_night_countmostfrequentcontact","messages_received_night_count","messages_received_night_distinctcontacts","messages_received_night_timefirstmessage","messages_received_night_timelastmessage"
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"2020-05-28",4,4,1,6,312
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@ -1,2 +1,2 @@
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"local_date","sms_sent_afternoon_countmostfrequentcontact","sms_sent_afternoon_count","sms_sent_afternoon_distinctcontacts","sms_sent_afternoon_timefirstsms","sms_sent_afternoon_timelastsms"
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"local_date","messages_sent_afternoon_countmostfrequentcontact","messages_sent_afternoon_count","messages_sent_afternoon_distinctcontacts","messages_sent_afternoon_timefirstmessage","messages_sent_afternoon_timelastmessage"
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"2020-05-28",1,3,3,722,979
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@ -1,3 +1,3 @@
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"local_date","sms_sent_daily_countmostfrequentcontact","sms_sent_daily_count","sms_sent_daily_distinctcontacts","sms_sent_daily_timefirstsms","sms_sent_daily_timelastsms"
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"local_date","messages_sent_daily_countmostfrequentcontact","messages_sent_daily_count","messages_sent_daily_distinctcontacts","messages_sent_daily_timefirstmessage","messages_sent_daily_timelastmessage"
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"2020-05-28",3,8,6,219,1401
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"2020-05-29",1,4,4,388,1401
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@ -1,3 +1,3 @@
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"local_date","sms_sent_evening_countmostfrequentcontact","sms_sent_evening_count","sms_sent_evening_distinctcontacts","sms_sent_evening_timefirstsms","sms_sent_evening_timelastsms"
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"local_date","messages_sent_evening_countmostfrequentcontact","messages_sent_evening_count","messages_sent_evening_distinctcontacts","messages_sent_evening_timefirstmessage","messages_sent_evening_timelastmessage"
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"2020-05-28",1,2,2,1218,1401
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"2020-05-29",1,2,2,1218,1401
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@ -1,3 +1,3 @@
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"local_date","sms_sent_morning_countmostfrequentcontact","sms_sent_morning_count","sms_sent_morning_distinctcontacts","sms_sent_morning_timefirstsms","sms_sent_morning_timelastsms"
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"local_date","messages_sent_morning_countmostfrequentcontact","messages_sent_morning_count","messages_sent_morning_distinctcontacts","messages_sent_morning_timefirstmessage","messages_sent_morning_timelastmessage"
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"2020-05-28",1,2,2,388,654
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"2020-05-29",1,2,2,388,654
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@ -1,2 +1,2 @@
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"local_date","sms_sent_night_countmostfrequentcontact","sms_sent_night_count","sms_sent_night_distinctcontacts","sms_sent_night_timefirstsms","sms_sent_night_timelastsms"
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"local_date","messages_sent_night_countmostfrequentcontact","messages_sent_night_count","messages_sent_night_distinctcontacts","messages_sent_night_timefirstmessage","messages_sent_night_timelastmessage"
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"2020-05-28",1,1,1,219,219
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@ -1,2 +1,2 @@
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"local_date","sms_received_afternoon_countmostfrequentcontact","sms_received_afternoon_count","sms_received_afternoon_distinctcontacts","sms_received_afternoon_timefirstsms","sms_received_afternoon_timelastsms"
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"local_date","messages_received_afternoon_countmostfrequentcontact","messages_received_afternoon_count","messages_received_afternoon_distinctcontacts","messages_received_afternoon_timefirstmessage","messages_received_afternoon_timelastmessage"
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"2020-05-28",1,2,2,830,949
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@ -1,3 +1,3 @@
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"local_date","sms_received_daily_countmostfrequentcontact","sms_received_daily_count","sms_received_daily_distinctcontacts","sms_received_daily_timefirstsms","sms_received_daily_timelastsms"
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"local_date","messages_received_daily_countmostfrequentcontact","messages_received_daily_count","messages_received_daily_distinctcontacts","messages_received_daily_timefirstmessage","messages_received_daily_timelastmessage"
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"2020-05-28",1,12,12,6,1382
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"2020-05-29",0,6,6,401,1382
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@ -1,3 +1,3 @@
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"local_date","sms_received_evening_countmostfrequentcontact","sms_received_evening_count","sms_received_evening_distinctcontacts","sms_received_evening_timefirstsms","sms_received_evening_timelastsms"
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"local_date","messages_received_evening_countmostfrequentcontact","messages_received_evening_count","messages_received_evening_distinctcontacts","messages_received_evening_timefirstmessage","messages_received_evening_timelastmessage"
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"2020-05-28",1,3,3,1173,1382
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"2020-05-29",0,3,3,1173,1382
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@ -1,3 +1,3 @@
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"local_date","sms_received_morning_countmostfrequentcontact","sms_received_morning_count","sms_received_morning_distinctcontacts","sms_received_morning_timefirstsms","sms_received_morning_timelastsms"
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"local_date","messages_received_morning_countmostfrequentcontact","messages_received_morning_count","messages_received_morning_distinctcontacts","messages_received_morning_timefirstmessage","messages_received_morning_timelastmessage"
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"2020-05-28",1,3,3,401,660
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"2020-05-29",0,3,3,401,660
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@ -1,2 +1,2 @@
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"local_date","sms_received_night_countmostfrequentcontact","sms_received_night_count","sms_received_night_distinctcontacts","sms_received_night_timefirstsms","sms_received_night_timelastsms"
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"local_date","messages_received_night_countmostfrequentcontact","messages_received_night_count","messages_received_night_distinctcontacts","messages_received_night_timefirstmessage","messages_received_night_timelastmessage"
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"2020-05-28",1,4,4,6,312
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@ -1,2 +1,2 @@
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"local_date","sms_sent_afternoon_countmostfrequentcontact","sms_sent_afternoon_count","sms_sent_afternoon_distinctcontacts","sms_sent_afternoon_timefirstsms","sms_sent_afternoon_timelastsms"
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"local_date","messages_sent_afternoon_countmostfrequentcontact","messages_sent_afternoon_count","messages_sent_afternoon_distinctcontacts","messages_sent_afternoon_timefirstmessage","messages_sent_afternoon_timelastmessage"
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"2020-05-28",1,3,3,722,979
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@ -1,3 +1,3 @@
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"local_date","sms_sent_daily_countmostfrequentcontact","sms_sent_daily_count","sms_sent_daily_distinctcontacts","sms_sent_daily_timefirstsms","sms_sent_daily_timelastsms"
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"local_date","messages_sent_daily_countmostfrequentcontact","messages_sent_daily_count","messages_sent_daily_distinctcontacts","messages_sent_daily_timefirstmessage","messages_sent_daily_timelastmessage"
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"2020-05-28",1,8,8,219,1401
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"2020-05-29",0,4,4,388,1401
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@ -1,3 +1,3 @@
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"local_date","sms_sent_evening_countmostfrequentcontact","sms_sent_evening_count","sms_sent_evening_distinctcontacts","sms_sent_evening_timefirstsms","sms_sent_evening_timelastsms"
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"local_date","messages_sent_evening_countmostfrequentcontact","messages_sent_evening_count","messages_sent_evening_distinctcontacts","messages_sent_evening_timefirstmessage","messages_sent_evening_timelastmessage"
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"2020-05-28",1,2,2,1218,1401
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"2020-05-29",0,2,2,1218,1401
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@ -1,3 +1,3 @@
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"local_date","sms_sent_morning_countmostfrequentcontact","sms_sent_morning_count","sms_sent_morning_distinctcontacts","sms_sent_morning_timefirstsms","sms_sent_morning_timelastsms"
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"local_date","messages_sent_morning_countmostfrequentcontact","messages_sent_morning_count","messages_sent_morning_distinctcontacts","messages_sent_morning_timefirstmessage","messages_sent_morning_timelastmessage"
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"2020-05-28",1,2,2,388,654
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"2020-05-29",0,2,2,388,654
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@ -1,2 +1,2 @@
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"local_date","sms_sent_night_countmostfrequentcontact","sms_sent_night_count","sms_sent_night_distinctcontacts","sms_sent_night_timefirstsms","sms_sent_night_timelastsms"
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"local_date","messages_sent_night_countmostfrequentcontact","messages_sent_night_count","messages_sent_night_distinctcontacts","messages_sent_night_timefirstmessage","messages_sent_night_timelastmessage"
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"2020-05-28",1,1,1,219,219
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@ -2,6 +2,7 @@
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# If you are extracting screen or Barnett's location features, screen and locations tables are mandatory.
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TABLES_FOR_SENSED_BINS: [messages, calls, screen]
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# Participants to include in the analysis
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# You must create a file for each participant named pXXX containing their device_id. This can be done manually or automatically
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PIDS: [test01, test02]
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@ -17,8 +18,8 @@ MESSAGES:
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DB_TABLE: messages
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TYPES : [received, sent]
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FEATURES:
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received: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
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sent: [count, distinctcontacts, timefirstsms, timelastsms, countmostfrequentcontact]
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received: [count, distinctcontacts, timefirstmessage, timelastmessage, countmostfrequentcontact]
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sent: [count, distinctcontacts, timefirstmessage, timelastmessage, countmostfrequentcontact]
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DAY_SEGMENTS: *day_segments
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# Communication call features config, TYPES and FEATURES keys need to match
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Reference in New Issue