diff --git a/.gitignore b/.gitignore index 4ac47683..e15324bd 100644 --- a/.gitignore +++ b/.gitignore @@ -91,18 +91,18 @@ packrat/* !packrat/packrat.opts .snakemake/ -# exclude data from source control by default -data/external/* -!/data/external/.gitkeep -!/data/external/stachl_application_genre_catalogue.csv -!/data/external/timesegments*.csv -!/data/external/wiki_tz.csv -data/raw/* -!/data/raw/.gitkeep -data/interim/* -!/data/interim/.gitkeep -data/processed/* -!/data/processed/.gitkeep +# exclude data from source control by default -- temporarly added for working on PC and laptop (primoz) +# data/external/* +# !/data/external/.gitkeep +# !/data/external/stachl_application_genre_catalogue.csv +# !/data/external/timesegments*.csv +# !/data/external/wiki_tz.csv +# data/raw/* +# !/data/raw/.gitkeep +# data/interim/* +# !/data/interim/.gitkeep +# data/processed/* +# !/data/processed/.gitkeep reports/ .Rproj.user *.Rproj diff --git a/config.yaml b/config.yaml index 4b277ac5..d82b2f8e 100644 --- a/config.yaml +++ b/config.yaml @@ -477,7 +477,7 @@ EMPATICA_ACCELEROMETER: CONTAINER: ACC PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"] SRC_SCRIPT: src/features/empatica_accelerometer/dbdp/main.py @@ -486,7 +486,7 @@ EMPATICA_HEARTRATE: CONTAINER: HR PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr"] SRC_SCRIPT: src/features/empatica_heartrate/dbdp/main.py @@ -495,7 +495,7 @@ EMPATICA_TEMPERATURE: CONTAINER: TEMP PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxtemp", "mintemp", "avgtemp", "mediantemp", "modetemp", "stdtemp", "diffmaxmodetemp", "diffminmodetemp", "entropytemp"] SRC_SCRIPT: src/features/empatica_temperature/dbdp/main.py @@ -504,7 +504,7 @@ EMPATICA_ELECTRODERMAL_ACTIVITY: CONTAINER: EDA PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxeda", "mineda", "avgeda", "medianeda", "modeeda", "stdeda", "diffmaxmodeeda", "diffminmodeeda", "entropyeda"] SRC_SCRIPT: src/features/empatica_electrodermal_activity/dbdp/main.py @@ -513,7 +513,7 @@ EMPATICA_BLOOD_VOLUME_PULSE: CONTAINER: BVP PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxbvp", "minbvp", "avgbvp", "medianbvp", "modebvp", "stdbvp", "diffmaxmodebvp", "diffminmodebvp", "entropybvp"] SRC_SCRIPT: src/features/empatica_blood_volume_pulse/dbdp/main.py @@ -522,7 +522,7 @@ EMPATICA_INTER_BEAT_INTERVAL: CONTAINER: IBI PROVIDERS: DBDP: - COMPUTE: False + COMPUTE: True FEATURES: ["maxibi", "minibi", "avgibi", "medianibi", "modeibi", "stdibi", "diffmaxmodeibi", "diffminmodeibi", "entropyibi"] SRC_SCRIPT: src/features/empatica_inter_beat_interval/dbdp/main.py diff --git a/data/external/aware_csv/calls.csv b/data/external/aware_csv/calls.csv new file mode 100644 index 00000000..530f275a --- /dev/null +++ b/data/external/aware_csv/calls.csv @@ -0,0 +1,9 @@ +"_id","timestamp","device_id","call_type","call_duration","trace" +1,1587663260695,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",2,14,"d5e84f8af01b2728021d4f43f53a163c0c90000c" +2,1587739118007,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",3,0,"47c125dc7bd163b8612cdea13724a814917b6e93" +5,1587746544891,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",2,95,"9cc793ffd6e88b1d850ce540b5d7e000ef5650d4" +6,1587911379859,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",2,63,"51fb9344e988049a3fec774c7ca622358bf80264" +7,1587992647361,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",3,0,"2a862a7730cfdfaf103a9487afe3e02935fd6e02" +8,1588020039448,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",1,11,"a2c53f6a086d98622c06107780980cf1bb4e37bd" +11,1588176189024,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",2,65,"56589df8c830c70e330b644921ed38e08d8fd1f3" +12,1588197745079,"a748ee1a-1d0b-4ae9-9074-279a2b6ba524",3,0,"cab458018a8ed3b626515e794c70b6f415318adc" diff --git a/data/external/empatica/empatica1/E4 Data.zip b/data/external/empatica/empatica1/E4 Data.zip new file mode 100644 index 00000000..40691f5f Binary files /dev/null and b/data/external/empatica/empatica1/E4 Data.zip differ diff --git a/data/external/participant_files/p01.yaml b/data/external/participant_files/p01.yaml new file mode 100644 index 00000000..90f48512 --- /dev/null +++ b/data/external/participant_files/p01.yaml @@ -0,0 +1,11 @@ +PHONE: + DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524] # the participant's AWARE device id + PLATFORMS: [android] # or ios + LABEL: MyTestP01 # any string + START_DATE: 2020-01-01 # this can also be empty + END_DATE: 2021-01-01 # this can also be empty +EMPATICA: + DEVICE_IDS: [empatica1] + LABEL: test01 + START_DATE: + END_DATE: