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Merge branch 'master' into run_test_participant

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junos 2022-03-16 17:27:50 +01:00
parent 155395512c 83a8bb6689
commit 3e9cdde66e
2 changed files with 6 additions and 4 deletions
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9
Snakefile
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@ -412,10 +412,11 @@ for provider in config["ALL_CLEANING_OVERALL"]["PROVIDERS"].keys():
files_to_compute.extend(expand("data/processed/features/all_participants/all_sensor_features_cleaned_" + provider.lower() +".csv")) files_to_compute.extend(expand("data/processed/features/all_participants/all_sensor_features_cleaned_" + provider.lower() +".csv"))
# Baseline features # Baseline features
files_to_compute.extend(expand("data/raw/baseline_merged.csv")) if config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["COMPUTE"]:
files_to_compute.extend(expand("data/raw/{pid}/participant_baseline_raw.csv", pid=config["PIDS"])) files_to_compute.extend(expand("data/raw/baseline_merged.csv"))
files_to_compute.extend(expand("data/interim/{pid}/baseline_questionnaires.csv", pid=config["PIDS"])) files_to_compute.extend(expand("data/raw/{pid}/participant_baseline_raw.csv", pid=config["PIDS"]))
files_to_compute.extend(expand("data/processed/features/{pid}/baseline_features.csv", pid=config["PIDS"])) files_to_compute.extend(expand("data/interim/{pid}/baseline_questionnaires.csv", pid=config["PIDS"]))
files_to_compute.extend(expand("data/processed/features/{pid}/baseline_features.csv", pid=config["PIDS"]))
rule all: rule all:
input: input:

1
config.yaml
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@ -637,6 +637,7 @@ ALL_CLEANING_OVERALL:
PARAMS_FOR_ANALYSIS: PARAMS_FOR_ANALYSIS:
BASELINE: BASELINE:
COMPUTE: False
FOLDER: data/external/baseline FOLDER: data/external/baseline
CONTAINER: [results-survey637813_final.csv, # Slovenia CONTAINER: [results-survey637813_final.csv, # Slovenia
results-survey358134_final.csv, # Belgium 1 results-survey358134_final.csv, # Belgium 1