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[WIP] Prepare yaml files. 

These will be used to create participants files.
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junos 2021-11-24 19:11:19 +01:00
parent ab84109d55
commit 39bd244511
2 changed files with 9 additions and 0 deletions
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1
config.yaml
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@ -7,6 +7,7 @@ PIDS: [nokia_0000003]
# See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files # See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files
CREATE_PARTICIPANT_FILES: CREATE_PARTICIPANT_FILES:
USERNAMES_CSV: "data/external/usernames.csv"
CSV_FILE_PATH: "data/external/example_participants.csv" # see docs for required format CSV_FILE_PATH: "data/external/example_participants.csv" # see docs for required format
PHONE_SECTION: PHONE_SECTION:
ADD: True ADD: True

8
rules/preprocessing.smk
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@ -4,6 +4,14 @@ rule create_example_participant_files:
shell: shell:
"echo 'PHONE:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n PLATFORMS: [android]\n LABEL: test-01\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\nFITBIT:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n LABEL: test-01\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example01.yaml && echo 'PHONE:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n PLATFORMS: [ios]\n LABEL: test-02\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\nFITBIT:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n LABEL: test-02\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example02.yaml" "echo 'PHONE:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n PLATFORMS: [android]\n LABEL: test-01\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\nFITBIT:\n DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n LABEL: test-01\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example01.yaml && echo 'PHONE:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n PLATFORMS: [ios]\n LABEL: test-02\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\nFITBIT:\n DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n LABEL: test-02\n START_DATE: 2020-04-23 00:00:00\n END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example02.yaml"
rule prepare_participants_csv:
input:
username_list = config["CREATE_PARTICIPANT_FILES"]["USERNAMES_CSV"]
output:
participants_file = config["CREATE_PARTICIPANT_FILES"]["CSV_FILE_PATH"]
script:
"../src/data/streams/translate_usernames_into_participants_data.R"
rule create_participants_files: rule create_participants_files:
input: input:
participants_file = config["CREATE_PARTICIPANT_FILES"]["CSV_FILE_PATH"] participants_file = config["CREATE_PARTICIPANT_FILES"]["CSV_FILE_PATH"]