parent
32025cbd8c
commit
35d9779026
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@ -12,6 +12,12 @@ prepare_participants_file <- function() {
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device_id_container <- snakemake@params[["device_id_table"]]
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device_id_container <- snakemake@params[["device_id_table"]]
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start_end_date_container <- snakemake@params[["start_end_date_table"]]
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start_end_date_container <- snakemake@params[["start_end_date_table"]]
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output_data_file <- snakemake@output[["participants_file"]]
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platform <- "android"
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pid_format <- "p%03d"
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datetime_format <- "%Y-%m-%d %H:%M:%S"
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participant_data <- read_csv(username_list_csv_location, col_types = "c", progress = FALSE)
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participant_data <- read_csv(username_list_csv_location, col_types = "c", progress = FALSE)
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usernames <- participant_data$label
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usernames <- participant_data$label
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@ -31,7 +37,23 @@ prepare_participants_file <- function() {
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participant_data %<>%
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participant_data %<>%
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left_join(start_end_datetimes, by = "participant_id")
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left_join(start_end_datetimes, by = "participant_id")
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return(participant_data)
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participant_data %<>%
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mutate(
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pid = sprintf(pid_format, participant_id),
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start_date = strftime(datetime_start, format=datetime_format, tz = "UTC", usetz = FALSE), #TODO Check what timezone is expected
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end_date = strftime(datetime_end, format=datetime_format, tz = "UTC", usetz = FALSE),
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empatica_id = "placeholder", #TODO Provide in file?
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device_id = map_chr(device_ids, str_c, collapse = ";"),
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number_of_devices = map_int(device_ids, length),
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fitbit_id = ""
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) %>%
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rowwise() %>%
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mutate(platform = str_c(replicate(number_of_devices, platform), collapse = ";")) %>%
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ungroup() %>%
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arrange(pid) %>%
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select(pid, label, start_date, end_date, empatica_id, device_id, platform, fitbit_id)
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write_csv(participant_data, output_data_file)
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}
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}
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prepare_participants_file()
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