From 1f54195437797ab49a680b0ca49c78b884ca9b7b Mon Sep 17 00:00:00 2001
From: junos <junos.lukan@ijs.si>
Date: Wed, 8 Dec 2021 18:21:29 +0100
Subject: [PATCH] Configure timezone file to be created automatically.

---
 config.yaml             | 9 +++------
 rules/preprocessing.smk | 4 ++--
 2 files changed, 5 insertions(+), 8 deletions(-)

diff --git a/config.yaml b/config.yaml
index 438a694b..69f6b46d 100644
--- a/config.yaml
+++ b/config.yaml
@@ -27,16 +27,13 @@ TIME_SEGMENTS: &time_segments
 
 # See https://www.rapids.science/latest/setup/configuration/#timezone-of-your-study
 TIMEZONE: 
-    TYPE: SINGLE
+    TYPE: MULTIPLE
     SINGLE:
       TZCODE: Europe/Ljubljana
     MULTIPLE:
-      TZCODES_FILE: data/external/multiple_timezones_example.csv
-      IF_MISSING_TZCODE: STOP
+      TZCODES_FILE: data/external/multiple_timezones.csv
+      IF_MISSING_TZCODE: USE_DEFAULT
       DEFAULT_TZCODE: Europe/Ljubljana
-      FITBIT: 
-        ALLOW_MULTIPLE_TZ_PER_DEVICE: False
-        INFER_FROM_SMARTPHONE_TZ: False
 
 ########################################################################################################################
 #                                                 PHONE                                                                #
diff --git a/rules/preprocessing.smk b/rules/preprocessing.smk
index 668b2b68..fdce6f09 100644
--- a/rules/preprocessing.smk
+++ b/rules/preprocessing.smk
@@ -4,7 +4,7 @@ rule create_example_participant_files:
     shell:
         "echo 'PHONE:\n  DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n  PLATFORMS: [android]\n  LABEL: test-01\n  START_DATE: 2020-04-23 00:00:00\n  END_DATE: 2020-05-04 23:59:59\nFITBIT:\n  DEVICE_IDS: [a748ee1a-1d0b-4ae9-9074-279a2b6ba524]\n  LABEL: test-01\n  START_DATE: 2020-04-23 00:00:00\n  END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example01.yaml && echo 'PHONE:\n  DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n  PLATFORMS: [ios]\n  LABEL: test-02\n  START_DATE: 2020-04-23 00:00:00\n  END_DATE: 2020-05-04 23:59:59\nFITBIT:\n  DEVICE_IDS: [13dbc8a3-dae3-4834-823a-4bc96a7d459d]\n  LABEL: test-02\n  START_DATE: 2020-04-23 00:00:00\n  END_DATE: 2020-05-04 23:59:59\n' >> ./data/external/participant_files/example02.yaml"
 
-rule query_device_empatica_ids:
+rule query_usernames_device_empatica_ids:
     params:
         baseline_folder = "/mnt/e/STRAWbaseline/"
     output:
@@ -17,7 +17,7 @@ rule prepare_tzcodes_file:
     input:
         timezone_file = "data/external/timezone.csv"
     output:
-        tzcodes_file = "data/external/multiple_timezones.csv"
+        tzcodes_file = config["TIMEZONE"]["MULTIPLE"]["TZCODES_FILE"]
     script:
         "../tools/create_multi_timezones_file.py"