diff --git a/.travis.yml b/.travis.yml index ed54b1bb..e1d638c7 100644 --- a/.travis.yml +++ b/.travis.yml @@ -2,21 +2,15 @@ language: python python: - "3.7" -before_script: - # Install Packrat - - sudo snakemake packrat_install - - sudo snakemake packrat_init - - sudo snakemake packrat_restore +services: + - mysql before_install: - sudo apt-get install -y r-base - # - R -e 'install.packages(c( "rmarkdown"), repos = "http://cran.us.r-project.org")' - -r_binary_packages: - - rmarkdown + - chmod ugo+rw /usr/local/lib/R/site-library + - R -e 'install.packages(c( "rmarkdown"), repos = "http://cran.us.r-project.org")' install: - - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; - bash miniconda.sh -b -p $HOME/miniconda - source "$HOME/miniconda/etc/profile.d/conda.sh" @@ -31,8 +25,11 @@ install: - conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml - conda activate test-environment -services: - - mysql +before_script: + # Install Packrat + - snakemake packrat_install + - snakemake packrat_init + - snakemake packrat_restore script: - cp -r tests/data/raw/* data/raw