diff --git a/.travis.yml b/.travis.yml index 4fae302d..72a29939 100644 --- a/.travis.yml +++ b/.travis.yml @@ -38,7 +38,7 @@ jobs: - "$HOME/.local/share/renv" - "$TRAVIS_BUILD_DIR/renv/library" script: - - bash tests/scripts/run_tests.sh + - bash tests/scripts/run_tests.sh all test - name: Python 3.7 on macOS os: osx osx_image: xcode11.3 diff --git a/tests/scripts/run_tests.sh b/tests/scripts/run_tests.sh index 71d6cc1a..999f4ee2 100755 --- a/tests/scripts/run_tests.sh +++ b/tests/scripts/run_tests.sh @@ -9,8 +9,8 @@ clean_old_data() { rm -rf data/processed/* rm -rf data/interim/* - # echo Backing up preprocessing... - # cp rules/preprocessing.smk bak + echo Backing up preprocessing... + cp rules/preprocessing.smk bak } run_periodic_pipeline() { @@ -128,7 +128,7 @@ then else display_usage fi - + mv bak rules/preprocessing.smk elif [ $1 == 'all' ] then run_periodic_pipeline @@ -164,13 +164,3 @@ then else display_usage fi - -mv bak rules/preprocessing.smk -# Uncomment to return snakemake back to the original version when testing locally -# echo Cleaning up... -# mv bak rules/preprocessing.smk -# mv test_bak tests/scripts/test_sensor_features.py -# rm test_bak -# rm test_tmp -# rm bak -# rm tmp