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rapids/docs/features/fitbit-heartrate-summary.md

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Update Fitbit docs: HR & Steps
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# Fitbit Heart Rate Summary
Sensor parameters description for `[FITBIT_HEARTRATE_SUMMARY]`:
|Key                              | Description |
|----------------|-----------------------------------------------------------------------------------------------------------------------------------
Update fitbit docs
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|`[TABLE]`| Database table name or file path where the heart rate summary data is stored. The configuration keys in [Device Data Source Configuration](../../setup/configuration/#device-data-source-configuration) control whether this parameter is interpreted as table or file.
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Update fitbit docs
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The format of the column(s) containing the Fitbit sensor data can be `JSON` or `PLAIN_TEXT`. The data in `JSON` format is obtained directly from the Fitbit API. We support `PLAIN_TEXT` in case you already parsed your data and don't have access to your participants' Fitbit accounts anymore. If your data is in `JSON` format then summary and intraday data come packed together.
We provide examples of the input format that RAPIDS expects, note that both examples for `JSON` and `PLAIN_TEXT` are tabular and the actual format difference comes in the `fitbit_data` column (we truncate the `JSON` example for brevity).
Update Fitbit docs: HR & Steps
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??? example "Example of the structure of source data"
=== "JSON"
|device_id |fitbit_data |
|---------------------------------------- |--------------------------------------------------------- |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-07","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1200.6102,"max":88,"min":31,"minutes":1058,"name":"Out of Range"},{"caloriesOut":760.3020,"max":120,"min":86,"minutes":366,"name":"Fat Burn"},{"caloriesOut":15.2048,"max":146,"min":120,"minutes":2,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":72}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":68},{"time":"00:01:00","value":67},{"time":"00:02:00","value":67},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-08","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":1100.1120,"max":89,"min":30,"minutes":921,"name":"Out of Range"},{"caloriesOut":660.0012,"max":118,"min":82,"minutes":361,"name":"Fat Burn"},{"caloriesOut":23.7088,"max":142,"min":108,"minutes":3,"name":"Cardio"},{"caloriesOut":0,"max":221,"min":148,"minutes":0,"name":"Peak"}],"restingHeartRate":70}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":77},{"time":"00:01:00","value":75},{"time":"00:02:00","value":73},...],"datasetInterval":1,"datasetType":"minute"}}
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |{"activities-heart":[{"dateTime":"2020-10-09","value":{"customHeartRateZones":[],"heartRateZones":[{"caloriesOut":750.3615,"max":77,"min":30,"minutes":851,"name":"Out of Range"},{"caloriesOut":734.1516,"max":107,"min":77,"minutes":550,"name":"Fat Burn"},{"caloriesOut":131.8579,"max":130,"min":107,"minutes":29,"name":"Cardio"},{"caloriesOut":0,"max":220,"min":130,"minutes":0,"name":"Peak"}],"restingHeartRate":69}}],"activities-heart-intraday":{"dataset":[{"time":"00:00:00","value":90},{"time":"00:01:00","value":89},{"time":"00:02:00","value":88},...],"datasetInterval":1,"datasetType":"minute"}}
=== "PLAIN_TEXT"
v0.3.1
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All columns are mandatory, however, all except `device_id` and `local_date_time` can be empty if you don't have that data. Just have in mind that some features will be empty if some of these columns are empty.
Update Fitbit docs: HR & Steps
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|device_id |local_date_time |heartrate_daily_restinghr |heartrate_daily_caloriesoutofrange |heartrate_daily_caloriesfatburn |heartrate_daily_caloriescardio |heartrate_daily_caloriespeak |
|-------------------------------------- |----------------- |------- |-------------- |------------- |------------ |-------|
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |2020-10-07 |72 |1200.6102 |760.3020 |15.2048 |0 |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |2020-10-08 |70 |1100.1120 |660.0012 |23.7088 |0 |
|a748ee1a-1d0b-4ae9-9074-279a2b6ba524 |2020-10-09 |69 |750.3615 |734.1516 |131.8579 |0 |
## RAPIDS provider
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!!! info "Available time segments"
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- Only available for segments that span 1 or more complete days (e.g. Jan 1st 00:00 to Jan 3rd 23:59)
!!! info "File Sequence"
```bash
- data/raw/{pid}/fitbit_heartrate_summary_raw.csv
- data/raw/{pid}/fitbit_heartrate_summary_parsed.csv
- data/raw/{pid}/fitbit_heartrate_summary_parsed_with_datetime.csv
- data/interim/{pid}/fitbit_heartrate_summary_features/fitbit_heartrate_summary_{language}_{provider_key}.csv
- data/processed/features/{pid}/fitbit_heartrate_summary.csv
```
Parameters description for `[FITBIT_HEARTRATE_SUMMARY][PROVIDERS][RAPIDS]`:
|Key                              | Description |
|----------------|-----------------------------------------------------------------------------------------------------------------------------------
|`[COMPUTE]` | Set to `True` to extract `FITBIT_HEARTRATE_SUMMARY` features from the `RAPIDS` provider|
|`[FEATURES]` | Features to be computed from heart rate summary data, see table below |
Features description for `[FITBIT_HEARTRATE_SUMMARY][PROVIDERS][RAPIDS]`:
|Feature |Units |Description|
|-------------------------- |---------- |---------------------------|
Refactor day segments to time segments
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|maxrestinghr |beats/mins |The maximum daily resting heart rate during a time segment.
|minrestinghr |beats/mins |The minimum daily resting heart rate during a time segment.
|avgrestinghr |beats/mins |The average daily resting heart rate during a time segment.
|medianrestinghr |beats/mins |The median of daily resting heart rate during a time segment.
|moderestinghr |beats/mins |The mode of daily resting heart rate during a time segment.
|stdrestinghr |beats/mins |The standard deviation of daily resting heart rate during a time segment.
|diffmaxmoderestinghr |beats/mins |The difference between the maximum and mode daily resting heart rate during a time segment.
|diffminmoderestinghr |beats/mins |The difference between the mode and minimum daily resting heart rate during a time segment.
|entropyrestinghr |nats |Shannon’s entropy measurement based on daily resting heart rate during a time segment.
|sumcaloriesZONE |cals |The total daily calories burned within `heartrate_zone` during a time segment.
|maxcaloriesZONE |cals |The maximum daily calories burned within `heartrate_zone` during a time segment.
|mincaloriesZONE |cals |The minimum daily calories burned within `heartrate_zone` during a time segment.
|avgcaloriesZONE |cals |The average daily calories burned within `heartrate_zone` during a time segment.
|mediancaloriesZONE |cals |The median of daily calories burned within `heartrate_zone` during a time segment.
|stdcaloriesZONE |cals |The standard deviation of daily calories burned within `heartrate_zone` during a time segment.
|entropycaloriesZONE |nats |Shannon’s entropy measurement based on daily calories burned within `heartrate_zone` during a time segment.
Update Fitbit docs: HR & Steps
2020-11-19 18:30:16 +01:00
!!! note "Assumptions/Observations"
1. There are four heart rate zones (ZONE): ``outofrange``, ``fatburn``, ``cardio``, and ``peak``. Please refer to [Fitbit documentation](https://help.fitbit.com/articles/en_US/Help_article/1565.htm) for more information about the way they are computed.
2. Calories' accuracy depends on the users’ Fitbit profile (weight, height, etc.).