rapids/rules/reports.smk

77 lines
4.1 KiB
Plaintext
Raw Normal View History

2020-07-22 22:47:32 +02:00
rule heatmap_features_correlations:
2019-10-25 17:12:55 +02:00
input:
2020-07-22 22:47:32 +02:00
features = expand("data/processed/{pid}/{sensor}_{day_segment}.csv", pid=config["PIDS"], sensor=config["HEATMAP_FEATURES_CORRELATIONS"]["PHONE_FEATURES"]+config["HEATMAP_FEATURES_CORRELATIONS"]["FITBIT_FEATURES"], day_segment=config["DAY_SEGMENTS"]),
phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"])
2020-07-22 22:47:32 +02:00
params:
min_rows_ratio = config["HEATMAP_FEATURES_CORRELATIONS"]["MIN_ROWS_RATIO"],
corr_threshold = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_THRESHOLD"],
corr_method = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_METHOD"]
2020-07-22 22:47:32 +02:00
output:
"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_features_correlations.html"
2020-07-22 22:47:32 +02:00
script:
"../src/visualization/heatmap_features_correlations.py"
rule histogram_valid_sensed_hours:
input:
phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"])
2020-07-22 22:47:32 +02:00
output:
"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/histogram_valid_sensed_hours.html"
2020-07-22 22:47:32 +02:00
script:
"../src/visualization/histogram_valid_sensed_hours.py"
rule heatmap_days_by_sensors:
input:
sensors = optional_heatmap_days_by_sensors_input,
phone_valid_sensed_days = "data/interim/{pid}/phone_valid_sensed_days_{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins.csv"
2019-10-25 17:12:55 +02:00
params:
2020-02-07 17:14:19 +01:00
pid = "{pid}",
2020-07-22 22:47:32 +02:00
expected_num_of_days = config["HEATMAP_DAYS_BY_SENSORS"]["EXPECTED_NUM_OF_DAYS"]
output:
"reports/interim/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/{pid}/heatmap_days_by_sensors.html"
2020-07-22 22:47:32 +02:00
script:
"../src/visualization/heatmap_days_by_sensors.py"
rule heatmap_days_by_sensors_all_participants:
input:
heatmap_rows = expand("reports/interim/{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins/{pid}/heatmap_days_by_sensors.html", pid=config["PIDS"])
2019-10-25 17:12:55 +02:00
output:
"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_days_by_sensors_all_participants.html"
2019-10-25 17:12:55 +02:00
script:
2020-07-22 22:47:32 +02:00
"../src/visualization/heatmap_days_by_sensors_all_participants.Rmd"
2020-07-22 22:47:32 +02:00
rule heatmap_sensed_bins:
input:
2020-02-20 16:16:03 +01:00
sensor = "data/interim/{pid}/phone_sensed_bins.csv",
pid_file = "data/external/{pid}"
params:
pid = "{pid}",
2020-07-22 22:47:32 +02:00
bin_size = config["HEATMAP_SENSED_BINS"]["BIN_SIZE"]
output:
2020-07-22 22:47:32 +02:00
"reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html"
script:
2020-07-22 22:47:32 +02:00
"../src/visualization/heatmap_sensed_bins.py"
rule heatmap_sensed_bins_all_participants:
input:
heatmap_sensed_bins = expand("reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html", pid=config["PIDS"])
output:
"reports/data_exploration/heatmap_sensed_bins_all_participants.html"
script:
"../src/visualization/heatmap_sensed_bins_all_participants.Rmd"
rule overall_compliance_heatmap:
input:
phone_sensed_bins = expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]),
phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]),
pid_files = expand("data/external/{pid}", pid=config["PIDS"])
params:
only_show_valid_days = config["OVERALL_COMPLIANCE_HEATMAP"]["ONLY_SHOW_VALID_DAYS"],
local_timezone = config["READABLE_DATETIME"]["FIXED_TIMEZONE"],
2020-07-22 22:47:32 +02:00
expected_num_of_days = config["OVERALL_COMPLIANCE_HEATMAP"]["EXPECTED_NUM_OF_DAYS"],
bin_size = config["OVERALL_COMPLIANCE_HEATMAP"]["BIN_SIZE"],
min_bins_per_hour = "{min_valid_bins_per_hour}"
output:
"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/overall_compliance_heatmap.html"
script:
"../src/visualization/overall_compliance_heatmap.py"