rapids/tests/Snakefile

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2020-04-29 17:44:31 +02:00
configfile: "config.yaml"
include: "../rules/packrat.snakefile"
include: "../rules/preprocessing.snakefile"
include: "../rules/features.snakefile"
include: "../rules/models.snakefile"
include: "../rules/reports.snakefile"
include: "../rules/mystudy.snakefile" # You can add snakfiles with rules tailored to your project
rule all:
input:
expand("data/raw/{pid}/{sensor}_raw.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
expand("data/raw/{pid}/{sensor}_with_datetime.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
expand("data/processed/{pid}/sms_{sms_type}_{day_segment}.csv",
pid=config["PIDS"],
sms_type = config["SMS"]["TYPES"],
day_segment = config["SMS"]["DAY_SEGMENTS"]),
rule clean:
shell:
"rm -rf data/raw/* && rm -rf data/interim/* && rm -rf data/processed/* && rm -rf reports/figures/* && rm -rf reports/*.zip && rm -rf reports/compliance/*"