2020-06-05 18:46:36 +02:00
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#!/bin/bash
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# Commmands necessary to setup and run the tests for RAPIDS
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2020-06-17 22:23:00 +02:00
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echo Setting up for testing...
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echo Copying files...
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2020-06-05 18:46:36 +02:00
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cp -r tests/data/raw/* data/raw
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2020-06-17 22:23:00 +02:00
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cp tests/data/external/* data/external
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echo Disabling downloading of dataset...
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2020-06-05 18:46:36 +02:00
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sed -e '10,20 s/^/#/' -e 's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.snakefile > tmp
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cp tmp rules/preprocessing.snakefile
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2020-06-17 22:23:00 +02:00
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echo Disabling downloading of dataset...
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2020-06-05 18:46:36 +02:00
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snakemake --profile tests/settings
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2020-06-17 22:23:00 +02:00
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echo Running tests on data produced...
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2020-06-05 18:46:36 +02:00
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python -m unittest discover tests/scripts/ -v
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