rapids/rules/mystudy.snakefile

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rule days_to_analyse:
input:
participant_info = "data/external/participant_info.csv",
pid_file = "data/external/{pid}"
params:
days_before_surgery = config["METRICS_FOR_ANALYSIS"]["DAYS_BEFORE_SURGERY"],
days_after_discharge = config["METRICS_FOR_ANALYSIS"]["DAYS_AFTER_DISCHARGE"],
days_in_hospital= config["METRICS_FOR_ANALYSIS"]["DAYS_IN_HOSPITAL"]
output:
"data/interim/{pid}/days_to_analyse_{days_before_surgery}_{days_in_hospital}_{days_after_discharge}.csv"
script:
"../src/models/select_days_to_analyse.py"