Reproducible Analysis Pipeline for Data Streams (RAPIDS) allows you to process smartphone and wearable data to extract **behavioral features** (a.k.a. digital biomarkers/phenotypes).
RAPIDS is open source, documented, modular, tested, and reproducible. At the moment we support smartphone data collected with [AWARE](https://awareframework.com/) and wearable data from Fitbit devices.
:material-slack: Questions or feedback can be posted on \#rapids in AWARE Framework\'s [slack](http://awareframework.com:3000/).
:material-github: Bugs should be reported on [Github](https://github.com/carissalow/rapids/issues).
:fontawesome-solid-tasks: Join our discussions on our algorithms and assumptions for feature [processing](https://github.com/carissalow/rapids/issues?q=is%3Aissue+is%3Aopen+label%3Adiscussion).
RAPIDS is formed by R and Python scripts orchestrated by [Snakemake](https://snakemake.readthedocs.io/en/stable/). We suggest you read Snakemake's docs but in short: every link in the analysis chain is atomic and has files as input and output. Behavioral features are processed per sensor and per participant.
## What are the benefits of using RAPIDS?
1.**Consistent analysis**. Every participant sensor dataset is analyzed in the exact same way and isolated from each other.
2.**Efficient analysis**. Every analysis step is executed only once. Whenever your data or configuration changes only the affected files are updated.
5.**Parallel execution**. Thanks to Snakemake, your analysis can be executed over multiple cores without changing your code.
6.**Extensible code**. You can easily add your own behavioral features in R or Python and keep authorship and citations.
3.**Timezone aware**. Your data is adjusted to the specified timezone (multiple timezones suport *coming soon*).
4.**Flexible day segments**. You can extract behavioral features on time windows of any length (e.g. 5 minutes, 3 hours, 2 days), on every day or particular days (e.g. weekends, Mondays, the 1st of each month, etc.) or around events of interest (e.g. surveys or clinical relapses).
7.**Tested code**. We are constantly adding tests to make sure our behavioral features are correct.
8.**Reproducible code**. You can be sure your code will run in other computers as intended thanks to R and Python virtual environments. You can share your analysis code along your publications without any overhead.
9.**Private**. All your data is processed locally.
In broad terms the `config.yaml`, `.env` files, participant files, and day segment files are the only ones that you will have to modify. All data is stored in `data/` and all scripts are stored in `src/`. For more information see RAPIDS' [File Structure](file-structure.md).
