2022-02-04 18:21:42 +01:00
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rule merge_baseline_data:
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2022-02-04 17:37:00 +01:00
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input:
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2022-02-04 18:21:42 +01:00
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data = expand(config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["FOLDER"] + "/{container}", container=config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["CONTAINER"])
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2022-02-04 17:37:00 +01:00
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output:
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2022-02-04 18:21:42 +01:00
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"data/raw/baseline_merged.csv"
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2022-02-04 17:37:00 +01:00
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script:
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2022-02-04 18:21:42 +01:00
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"../src/data/merge_baseline_data.py"
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2022-02-04 17:37:00 +01:00
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2022-02-04 18:37:57 +01:00
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rule download_baseline_data:
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input:
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participant_file = "data/external/participant_files/{pid}.yaml",
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data = "data/raw/baseline_merged.csv"
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output:
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"data/raw/{pid}/participant_baseline_raw.csv"
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script:
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"../src/data/download_baseline_data.py"
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2022-02-23 11:09:33 +01:00
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rule baseline_features:
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input:
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"data/raw/{pid}/participant_baseline_raw.csv"
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params:
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pid="{pid}",
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features=config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["FEATURES"]
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output:
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"data/processed/features/{pid}/baseline_features.csv"
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script:
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"../src/data/baseline_features.py"
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