rapids/src/features/entry.py

import pandas as pd
from utils.utils import fetch_provider_features, run_provider_cleaning_script

import sys

sensor_data_files = dict(snakemake.input)

provider = snakemake.params["provider"]
provider_key = snakemake.params["provider_key"]
sensor_key = snakemake.params["sensor_key"]

calc_windows = True if (provider.get("WINDOWS", False) and provider["WINDOWS"].get("COMPUTE", False)) else False

if sensor_key == "all_cleaning_individual" or sensor_key == "all_cleaning_overall":
    # Data cleaning
    if "overall" in sensor_key:
        sensor_features = run_provider_cleaning_script(provider, provider_key, sensor_key, sensor_data_files, snakemake.params["target"])
    else:
        sensor_features = run_provider_cleaning_script(provider, provider_key, sensor_key, sensor_data_files)
else:
    # Extract sensor features
    del sensor_data_files["time_segments_labels"]
    time_segments_file = snakemake.input["time_segments_labels"]

    if calc_windows:
        window_features, second_order_features = fetch_provider_features(provider, provider_key, sensor_key, sensor_data_files, time_segments_file, calc_windows=True)        

        window_features.to_csv(snakemake.output[1], index=False)
        second_order_features.to_csv(snakemake.output[0], index=False)

    elif "empatica" in sensor_key: 
        pd.DataFrame().to_csv(snakemake.output[1], index=False)

    if not calc_windows:
        sensor_features = fetch_provider_features(provider, provider_key, sensor_key, sensor_data_files, time_segments_file, calc_windows=False)

if not calc_windows:
    sensor_features.to_csv(snakemake.output[0], index=False)